RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 TRAV41A0A0B4J266 112 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 TRAV24A0A0B4J272 114 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 TRIM64CA6NLI5 447 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 A8MZ25 164 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 LINC01619G3V211 115 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 H3BSH0 61 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 I3L521 148 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 HSPB6O14558 160 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 EI24O14681 340 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 LANCL1O43813 399 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 MRPS14O60783 128 aaKnown RBP4.9□□□□□ -1.63
CUX1-220ENST00000607092 OR7C1O76099 320 aaPredicted RBP4.9□□□□□ -1.63
CUX1-220ENST00000607092 RGS11O94810 467 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 FADS2O95864 444 aaKnown RBP4.9□□□□□ -1.63
CUX1-220ENST00000607092 HLA-DRB1P01911 266 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 FRMD6-AS1P0C7T7 363 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 CALCBP10092 127 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 GP9P14770 177 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 SSTR5P35346 364 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 PPP3R1P63098 170 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 PITPNAQ00169 270 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 ALKBH1Q13686 389 aaKnown RBP4.9□□□□□ -1.63
CUX1-220ENST00000607092 MMDQ15546 238 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 LTC4SQ16873 150 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 TP53I3Q53FA7 332 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 TM4SF20Q53R12 229 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 ACSM6Q6P461 480 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 SLC25A48Q6ZT89 311 aaKnown RBP4.9□□□□□ -1.63
CUX1-220ENST00000607092 SSX6Q7RTT6 188 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 BCDIN3DQ7Z5W3 292 aaKnown RBP4.9□□□□□ -1.63
CUX1-220ENST00000607092 SYS1Q8N2H4 156 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 PARP16Q8N5Y8 322 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 ACBD7Q8N6N7 88 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 ZNF491Q8N8L2 437 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 SETD9Q8NE22 299 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 ZNF555Q8NEP9 628 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 NEK7Q8TDX7 302 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 TNFAIP8L1Q8WVP5 186 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 RFT1Q96AA3 541 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 DGCR14Q96DF8 476 aaKnown RBP4.9□□□□□ -1.63
CUX1-220ENST00000607092 MRPS24Q96EL2 167 aaKnown RBP4.9□□□□□ -1.63
CUX1-220ENST00000607092 CNBD2Q96M20 576 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 ZNF251Q9BRH9 671 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 TM2D3Q9BRN9 247 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 METTL9Q9H1A3 318 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 STUB1Q9UNE7 303 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 DHDHQ9UQ10 334 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 ST3GAL6Q9Y274 331 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 GMPPBQ9Y5P6 360 aa4.9□□□□□ -1.63
CUX1-220ENST00000607092 FAM90A10PA6NDY2 464 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 OR4C45A6NMZ5 311 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 MCRIP1C9JLW8 97 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 H0Y980 276 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 HSPA12AO43301 675 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 IGLV1-40P01703 118 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 IGHV3-7P01780 117 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 TFAP2AP05549 437 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 GLAP06280 429 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 LGALS1P09382 135 aaKnown RBP4.89□□□□□ -1.63
CUX1-220ENST00000607092 GTF2F2P13984 249 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 ZP3P21754 424 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 EPHA2P29317 976 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 PPIFP30405 207 aaKnown RBP4.89□□□□□ -1.63
CUX1-220ENST00000607092 REG1BP48304 166 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 RAB9AP51151 201 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 GBX2P52951 348 aaPredicted RBP4.89□□□□□ -1.63
CUX1-220ENST00000607092 ZNF85Q03923 595 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 TATDN3Q17R31 274 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 MOGAT2Q3SYC2 334 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 RBM48Q5RL73 367 aaKnown RBP4.89□□□□□ -1.63
CUX1-220ENST00000607092 SLC25A30Q5SVS4 291 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 ASCL4Q6XD76 172 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 ANKRD13BQ86YJ7 626 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 SUMF2Q8NBJ7 301 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 TMEM104Q8NE00 496 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 TSPAN14Q8NG11 270 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 OR51A2Q8NGJ7 313 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 OR52N1Q8NH53 320 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 OR5AK2Q8NH90 309 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 TSEN15Q8WW01 171 aaKnown RBP4.89□□□□□ -1.63
CUX1-220ENST00000607092 LEAP2Q969E1 77 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 Q96MT0 163 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 CLUHP3Q96NS8 147 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 SPACA5Q96QH8 159 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 GABARAPL3Q9BY60 117 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 SLA2Q9H6Q3 261 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 PARP11Q9NR21 331 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 PLSCR3Q9NRY6 295 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 KCNIP1Q9NZI2 227 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 CKLFQ9UBR5 152 aa4.89□□□□□ -1.63
CUX1-220ENST00000607092 IGHV3-72A0A0B4J1Y9 119 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 A0A0G2JLM5 398 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 LOC100130705A0A1B0GUX0 176 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 FAM90A7PA6NKC0 464 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 LINC01548A6NM66 108 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 FAM90A23PA8MXZ1 464 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 FAM229AH3BQW9 127 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 C15orf65H3BRN8 121 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 J3QLW9 94 aa4.88□□□□□ -1.63
CUX1-220ENST00000607092 AIPO00170 330 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms