RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 RBP4P02753 201 aa12.58□□□□□ -0.4
TRIM28-209ENST00000597423 LMO4P61968 165 aa12.58□□□□□ -0.4
TRIM28-209ENST00000597423 AADACL3Q5VUY0 350 aa12.58□□□□□ -0.4
TRIM28-209ENST00000597423 HEPN1Q6WQI6 88 aa12.58□□□□□ -0.4
TRIM28-209ENST00000597423 FGFRL1Q8N441 504 aa12.58□□□□□ -0.4
TRIM28-209ENST00000597423 LY6G5BQ8NDX9 201 aa12.58□□□□□ -0.4
TRIM28-209ENST00000597423 OR52L2PQ8NGH6 319 aa12.58□□□□□ -0.4
TRIM28-209ENST00000597423 MARCH1Q8TCQ1 289 aa12.58□□□□□ -0.4
TRIM28-209ENST00000597423 ZNF486Q96H40 463 aaPredicted RBP12.58□□□□□ -0.4
TRIM28-209ENST00000597423 YPEL2Q96QA6 119 aa12.58□□□□□ -0.4
TRIM28-209ENST00000597423 ALX4Q9H161 411 aaPredicted RBP12.58□□□□□ -0.4
TRIM28-209ENST00000597423 GPN1Q9HCN4 374 aaPredicted RBP12.58□□□□□ -0.4
TRIM28-209ENST00000597423 ITGB1BP1O14713 200 aa12.57□□□□□ -0.4
TRIM28-209ENST00000597423 PHF1O43189 567 aaPredicted RBP12.57□□□□□ -0.4
TRIM28-209ENST00000597423 ENSAO43768 121 aaKnown RBP12.57□□□□□ -0.4
TRIM28-209ENST00000597423 USF1P22415 310 aaPredicted RBP12.57□□□□□ -0.4
TRIM28-209ENST00000597423 NFYBP25208 207 aa12.57□□□□□ -0.4
TRIM28-209ENST00000597423 FXYD4P59646 89 aa12.57□□□□□ -0.4
TRIM28-209ENST00000597423 UBE2MP61081 183 aaKnown RBP12.57□□□□□ -0.4
TRIM28-209ENST00000597423 ZNF273Q14593 569 aa12.57□□□□□ -0.4
TRIM28-209ENST00000597423 LTC4SQ16873 150 aa12.57□□□□□ -0.4
TRIM28-209ENST00000597423 Q3ZCU0 254 aa12.57□□□□□ -0.4
TRIM28-209ENST00000597423 ABCA11PQ4W5N1 156 aa12.57□□□□□ -0.4
TRIM28-209ENST00000597423 FAHD2BQ6P2I3 314 aaPredicted RBP12.57□□□□□ -0.4
TRIM28-209ENST00000597423 TMED4Q7Z7H5 227 aa12.57□□□□□ -0.4
TRIM28-209ENST00000597423 GLCCI1Q86VQ1 547 aa12.57□□□□□ -0.4
TRIM28-209ENST00000597423 CMTM1Q8IZ96 169 aa12.57□□□□□ -0.4
TRIM28-209ENST00000597423 OR10V1Q8NGI7 309 aa12.57□□□□□ -0.4
TRIM28-209ENST00000597423 UBALD1Q8TB05 177 aa12.57□□□□□ -0.4
TRIM28-209ENST00000597423 TOMM40LQ969M1 308 aa12.57□□□□□ -0.4
TRIM28-209ENST00000597423 FAHD2AQ96GK7 314 aa12.57□□□□□ -0.4
TRIM28-209ENST00000597423 SLC5A7Q9GZV3 580 aa12.57□□□□□ -0.4
TRIM28-209ENST00000597423 GHITMQ9H3K2 345 aa12.57□□□□□ -0.4
TRIM28-209ENST00000597423 GFOD1Q9NXC2 390 aa12.57□□□□□ -0.4
TRIM28-209ENST00000597423 OR1A1Q9P1Q5 309 aa12.57□□□□□ -0.4
TRIM28-209ENST00000597423 GPR132Q9UNW8 380 aa12.57□□□□□ -0.4
TRIM28-209ENST00000597423 DOPEY2Q9Y3R5 2298 aa12.57□□□□□ -0.4
TRIM28-209ENST00000597423 IGHV4-30-2A0A087WSY4 118 aa12.56□□□□□ -0.4
TRIM28-209ENST00000597423 MEX3AA1L020 520 aaKnown RBP12.56□□□□□ -0.4
TRIM28-209ENST00000597423 C17orf98A8MV24 154 aa12.56□□□□□ -0.4
TRIM28-209ENST00000597423 A8MXK9 166 aa12.56□□□□□ -0.4
TRIM28-209ENST00000597423 FCN3O75636 299 aa12.56□□□□□ -0.4
TRIM28-209ENST00000597423 IL5P05113 134 aa12.56□□□□□ -0.4
TRIM28-209ENST00000597423 CTSDP07339 412 aaPredicted RBP12.56□□□□□ -0.4
TRIM28-209ENST00000597423 RAB7AP51149 207 aa12.56□□□□□ -0.4
TRIM28-209ENST00000597423 MECP2P51608 486 aaKnown RBP12.56□□□□□ -0.4
TRIM28-209ENST00000597423 MORN2Q502X0 79 aa12.56□□□□□ -0.4
TRIM28-209ENST00000597423 C1orf122Q6ZSJ8 110 aa12.56□□□□□ -0.4
TRIM28-209ENST00000597423 C5orf24Q7Z6I8 188 aa12.56□□□□□ -0.4
TRIM28-209ENST00000597423 CCDC71LQ8N9Z2 235 aa12.56□□□□□ -0.4
TRIM28-209ENST00000597423 OR2AK2Q8NG84 335 aa12.56□□□□□ -0.4
TRIM28-209ENST00000597423 UPRTQ96BW1 309 aa12.56□□□□□ -0.4
TRIM28-209ENST00000597423 AKR1E2Q96JD6 320 aa12.56□□□□□ -0.4
TRIM28-209ENST00000597423 FLVCR2Q9UPI3 526 aa12.56□□□□□ -0.4
TRIM28-209ENST00000597423 M0R1W7 72 aa12.55□□□□□ -0.4
TRIM28-209ENST00000597423 CCL3L1P16619 93 aa12.55□□□□□ -0.4
TRIM28-209ENST00000597423 OMGP23515 440 aa12.55□□□□□ -0.4
TRIM28-209ENST00000597423 PPP1CCP36873 323 aaKnown RBP12.55□□□□□ -0.4
TRIM28-209ENST00000597423 RAB25P57735 213 aa12.55□□□□□ -0.4
TRIM28-209ENST00000597423 LOXL3P58215 753 aa12.55□□□□□ -0.4
TRIM28-209ENST00000597423 ERVFRD-1P60508 538 aa12.55□□□□□ -0.4
TRIM28-209ENST00000597423 MSMO1Q15800 293 aa12.55□□□□□ -0.4
TRIM28-209ENST00000597423 METTL11BQ5VVY1 283 aa12.55□□□□□ -0.4
TRIM28-209ENST00000597423 BTNL3Q6UXE8 466 aa12.55□□□□□ -0.4
TRIM28-209ENST00000597423 TCF23Q7RTU1 214 aa12.55□□□□□ -0.4
TRIM28-209ENST00000597423 SLC25A42Q86VD7 318 aa12.55□□□□□ -0.4
TRIM28-209ENST00000597423 KIR3DL3Q8N743 410 aa12.55□□□□□ -0.4
TRIM28-209ENST00000597423 ZBTB34Q8NCN2 500 aa12.55□□□□□ -0.4
TRIM28-209ENST00000597423 SECTM1Q8WVN6 248 aa12.55□□□□□ -0.4
TRIM28-209ENST00000597423 DACT3Q96B18 629 aaPredicted RBP12.55□□□□□ -0.4
TRIM28-209ENST00000597423 RSRP1Q9BUV0 290 aa12.55□□□□□ -0.4
TRIM28-209ENST00000597423 ONECUT1Q9UBC0 465 aa12.55□□□□□ -0.4
TRIM28-209ENST00000597423 ZNF221Q9UK13 617 aa12.55□□□□□ -0.4
TRIM28-209ENST00000597423 VSIG4Q9Y279 399 aa12.55□□□□□ -0.4
TRIM28-209ENST00000597423 KCNIP3Q9Y2W7 256 aa12.55□□□□□ -0.4
TRIM28-209ENST00000597423 SESN1Q9Y6P5 492 aa12.55□□□□□ -0.4
TRIM28-209ENST00000597423 DCHS2Q6V1P9 2916 aa12.55□□□□□ -0.4
TRIM28-209ENST00000597423 IGHV3-43A0A0B4J1X8 118 aa12.54□□□□□ -0.4
TRIM28-209ENST00000597423 IGHV4-61A0A0C4DH41 118 aa12.54□□□□□ -0.4
TRIM28-209ENST00000597423 GPR31O00270 319 aa12.54□□□□□ -0.4
TRIM28-209ENST00000597423 OR8U9P0C7N5 309 aa12.54□□□□□ -0.4
TRIM28-209ENST00000597423 IGHV3-43DP0DP04 118 aa12.54□□□□□ -0.4
TRIM28-209ENST00000597423 AKR1C4P17516 323 aa12.54□□□□□ -0.4
TRIM28-209ENST00000597423 PRRX1P54821 245 aa12.54□□□□□ -0.4
TRIM28-209ENST00000597423 LCN2P80188 198 aa12.54□□□□□ -0.4
TRIM28-209ENST00000597423 TATDN3Q17R31 274 aa12.54□□□□□ -0.4
TRIM28-209ENST00000597423 C4orf46Q504U0 113 aa12.54□□□□□ -0.4
TRIM28-209ENST00000597423 TMEM128Q5BJH2 165 aa12.54□□□□□ -0.4
TRIM28-209ENST00000597423 Q5PR19 223 aa12.54□□□□□ -0.4
TRIM28-209ENST00000597423 PRAMEF5Q5TYX0 476 aa12.54□□□□□ -0.4
TRIM28-209ENST00000597423 OR8U1Q8NH10 309 aa12.54□□□□□ -0.4
TRIM28-209ENST00000597423 MRGPRFQ96AM1 343 aa12.54□□□□□ -0.4
TRIM28-209ENST00000597423 POLR3KQ9Y2Y1 108 aaPredicted RBP12.54□□□□□ -0.4
TRIM28-209ENST00000597423 AKAP6Q13023 2319 aa12.54□□□□□ -0.4
TRIM28-209ENST00000597423 TEX13DA0A0J9YY54 714 aaPredicted RBP12.53□□□□□ -0.4
TRIM28-209ENST00000597423 SNRPGP15A8MWD9 76 aa12.53□□□□□ -0.4
TRIM28-209ENST00000597423 C22orf46C9J442 243 aa12.53□□□□□ -0.4
TRIM28-209ENST00000597423 TOR1AO14656 332 aa12.53□□□□□ -0.4
TRIM28-209ENST00000597423 IGHV1-8P0DP01 117 aa12.53□□□□□ -0.4
TRIM28-209ENST00000597423 ANXA7P20073 488 aaKnown RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 141.1 ms