RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 ACSM3Q53FZ2 586 aa8.28□□□□□ -1.08
LIG1-213ENST00000596672 OR10K2Q6IF99 312 aa8.28□□□□□ -1.08
LIG1-213ENST00000596672 CD200R1LQ6Q8B3 271 aa8.28□□□□□ -1.08
LIG1-213ENST00000596672 GLIPR1L1Q6UWM5 242 aa8.28□□□□□ -1.08
LIG1-213ENST00000596672 UNQ9370/PRO34162Q6UXP9 181 aa8.28□□□□□ -1.08
LIG1-213ENST00000596672 LINC00299Q6ZSB3 139 aa8.28□□□□□ -1.08
LIG1-213ENST00000596672 C16orf82Q7Z2V1 217 aa8.28□□□□□ -1.08
LIG1-213ENST00000596672 CEACAM19Q7Z692 300 aa8.28□□□□□ -1.08
LIG1-213ENST00000596672 THNSL2Q86YJ6 484 aa8.28□□□□□ -1.08
LIG1-213ENST00000596672 ZNF565Q8N9K5 539 aa8.28□□□□□ -1.08
LIG1-213ENST00000596672 OR4K15Q8NH41 348 aa8.28□□□□□ -1.08
LIG1-213ENST00000596672 OR1L1Q8NH94 360 aa8.28□□□□□ -1.08
LIG1-213ENST00000596672 PHF21AQ96BD5 680 aa8.28□□□□□ -1.08
LIG1-213ENST00000596672 GFI1Q99684 422 aa8.28□□□□□ -1.08
LIG1-213ENST00000596672 BARHL1Q9BZE3 327 aa8.28□□□□□ -1.08
LIG1-213ENST00000596672 MRPS28Q9Y2Q9 187 aaKnown RBP8.28□□□□□ -1.08
LIG1-213ENST00000596672 HUWE1Q7Z6Z7 4374 aaKnown RBP8.28□□□□□ -1.08
LIG1-213ENST00000596672 IGHV1-3A0A0C4DH29 117 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 OOSP1A8MZH6 123 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 MAS1P04201 325 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 CD1AP06126 327 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 CD2P06729 351 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 CD37P11049 281 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 SNRPBP14678 240 aaKnown RBP8.27□□□□□ -1.09
LIG1-213ENST00000596672 FGF9P31371 208 aaPredicted RBP8.27□□□□□ -1.09
LIG1-213ENST00000596672 BRS3P32247 399 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 RPS19P39019 145 aaKnown RBP8.27□□□□□ -1.09
LIG1-213ENST00000596672 KCNJ3P48549 501 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 MXD1Q05195 221 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 GNMTQ14749 295 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 TRAM1Q15629 374 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 YIF1BQ5BJH7 314 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 CT45A1Q5HYN5 189 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 ATAD3CQ5T2N8 411 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 LCNL1Q6ZST4 164 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 CENPVQ7Z7K6 275 aaPredicted RBP8.27□□□□□ -1.09
LIG1-213ENST00000596672 LRRTM1Q86UE6 522 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 MS4A15Q8N5U1 240 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 CT45A3Q8NHU0 189 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 HAVCR2Q8TDQ0 301 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 TOMM40LQ969M1 308 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 ARL11Q969Q4 196 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 RPEQ96AT9 228 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 EAF1Q96JC9 268 aaPredicted RBP8.27□□□□□ -1.09
LIG1-213ENST00000596672 RITA1Q96K30 269 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 Q96M66 194 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 KCTD7Q96MP8 289 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 FAM210AQ96ND0 272 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 AURKAIP1Q9NWT8 199 aaPredicted RBP8.27□□□□□ -1.09
LIG1-213ENST00000596672 GFOD1Q9NXC2 390 aa8.27□□□□□ -1.09
LIG1-213ENST00000596672 A0A0A6YYD4 124 aa8.26□□□□□ -1.09
LIG1-213ENST00000596672 A0A1B0GVG6 124 aa8.26□□□□□ -1.09
LIG1-213ENST00000596672 TCRBV4S1A1TA0A5B7 111 aa8.26□□□□□ -1.09
LIG1-213ENST00000596672 TMEM30CPA0ZSE6 113 aa8.26□□□□□ -1.09
LIG1-213ENST00000596672 SMIM30A4D0T7 59 aa8.26□□□□□ -1.09
LIG1-213ENST00000596672 HSD17B6O14756 317 aa8.26□□□□□ -1.09
LIG1-213ENST00000596672 MAGEB3O15480 346 aa8.26□□□□□ -1.09
LIG1-213ENST00000596672 IGKV1D-33P01593 117 aa8.26□□□□□ -1.09
LIG1-213ENST00000596672 IGKV1-33P01594 117 aa8.26□□□□□ -1.09
LIG1-213ENST00000596672 SDC2P34741 201 aa8.26□□□□□ -1.09
LIG1-213ENST00000596672 PPP3R1P63098 170 aa8.26□□□□□ -1.09
LIG1-213ENST00000596672 ZNF816Q0VGE8 651 aaPredicted RBP8.26□□□□□ -1.09
LIG1-213ENST00000596672 MADCAM1Q13477 382 aa8.26□□□□□ -1.09
LIG1-213ENST00000596672 MPV17LQ2QL34 196 aa8.26□□□□□ -1.09
LIG1-213ENST00000596672 C9orf152Q5JTZ5 239 aa8.26□□□□□ -1.09
LIG1-213ENST00000596672 JAGN1Q8N5M9 183 aa8.26□□□□□ -1.09
LIG1-213ENST00000596672 LINC00311Q8N616 119 aa8.26□□□□□ -1.09
LIG1-213ENST00000596672 Q8N9W7 124 aa8.26□□□□□ -1.09
LIG1-213ENST00000596672 OR10A7Q8NGE5 316 aa8.26□□□□□ -1.09
LIG1-213ENST00000596672 OR10V1Q8NGI7 309 aa8.26□□□□□ -1.09
LIG1-213ENST00000596672 MOB4Q9Y3A3 225 aa8.26□□□□□ -1.09
LIG1-213ENST00000596672 TNCP24821 2201 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 SORL1Q92673 2214 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 UBE2QL1A1L167 161 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 K7EIL1 84 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 SDCBPO00560 298 aaPredicted RBP8.25□□□□□ -1.09
LIG1-213ENST00000596672 ORC5O43913 435 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 SC5DO75845 299 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 HBZP02008 142 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 GTF2F2P13984 249 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 MGMTP16455 207 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 GZMHP20718 246 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 GALP22466 123 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 CEACAM3P40198 252 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 RANBP1P43487 201 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 F2RL1P55085 397 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 QRFPP83859 136 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 RAB12Q6IQ22 244 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 ODF3L1Q8IXM7 274 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 LINC00482Q8N8I6 264 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 OR4F17Q8NGA8 305 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 OR52L2PQ8NGH6 319 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 OR52M1Q8NGK5 317 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 MCFD2Q8NI22 146 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 MRPL30Q8TCC3 161 aaKnown RBP8.25□□□□□ -1.09
LIG1-213ENST00000596672 RTN4IP1Q8WWV3 396 aaPredicted RBP8.25□□□□□ -1.09
LIG1-213ENST00000596672 FAM46BQ96A09 425 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 OR4F4Q96R69 305 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 SULT4A1Q9BR01 284 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 SELENOIQ9C0D9 397 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms