RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 DNASE1P24855 282 aa12.14□□□□□ -0.47
SHKBP1-211ENST00000595945 GNMTQ14749 295 aa12.14□□□□□ -0.47
SHKBP1-211ENST00000595945 TMEM30BQ3MIR4 351 aa12.14□□□□□ -0.47
SHKBP1-211ENST00000595945 LY6G6FQ5SQ64 297 aa12.14□□□□□ -0.47
SHKBP1-211ENST00000595945 FAM53AQ6NSI3 398 aaPredicted RBP12.14□□□□□ -0.47
SHKBP1-211ENST00000595945 LDLRAD3Q86YD5 345 aa12.14□□□□□ -0.47
SHKBP1-211ENST00000595945 FAM185AQ8N0U4 392 aa12.14□□□□□ -0.47
SHKBP1-211ENST00000595945 PRR18Q8N4B5 295 aa12.14□□□□□ -0.47
SHKBP1-211ENST00000595945 OR10A7Q8NGE5 316 aa12.14□□□□□ -0.47
SHKBP1-211ENST00000595945 OR52M1Q8NGK5 317 aa12.14□□□□□ -0.47
SHKBP1-211ENST00000595945 PARP12Q9H0J9 701 aaKnown RBP12.14□□□□□ -0.47
SHKBP1-211ENST00000595945 ALX4Q9H161 411 aaPredicted RBP12.14□□□□□ -0.47
SHKBP1-211ENST00000595945 NARFLQ9H6Q4 476 aa12.14□□□□□ -0.47
SHKBP1-211ENST00000595945 IDI2-AS1Q9NZ38 188 aa12.14□□□□□ -0.47
SHKBP1-211ENST00000595945 ZNF69Q9UC07 566 aa12.14□□□□□ -0.47
SHKBP1-211ENST00000595945 SLC23A1Q9UHI7 598 aa12.14□□□□□ -0.47
SHKBP1-211ENST00000595945 RPUSD1Q9UJJ7 312 aaKnown RBP12.14□□□□□ -0.47
SHKBP1-211ENST00000595945 ZNF221Q9UK13 617 aa12.14□□□□□ -0.47
SHKBP1-211ENST00000595945 JPT1Q9UK76 154 aa12.14□□□□□ -0.47
SHKBP1-211ENST00000595945 PDZD2O15018 2839 aa12.14□□□□□ -0.47
SHKBP1-211ENST00000595945 IGKV1D-13A0A0B4J2D9 117 aa12.13□□□□□ -0.47
SHKBP1-211ENST00000595945 C7orf66A4D0T2 115 aa12.13□□□□□ -0.47
SHKBP1-211ENST00000595945 FAM172BPA6NC97 362 aa12.13□□□□□ -0.47
SHKBP1-211ENST00000595945 C22orf46C9J442 243 aa12.13□□□□□ -0.47
SHKBP1-211ENST00000595945 IL5P05113 134 aa12.13□□□□□ -0.47
SHKBP1-211ENST00000595945 CTSDP07339 412 aaPredicted RBP12.13□□□□□ -0.47
SHKBP1-211ENST00000595945 ZNF728P0DKX0 622 aa12.13□□□□□ -0.47
SHKBP1-211ENST00000595945 IGKV1-13P0DP09 117 aa12.13□□□□□ -0.47
SHKBP1-211ENST00000595945 CCL3L1P16619 93 aa12.13□□□□□ -0.47
SHKBP1-211ENST00000595945 ZBTB25P24278 435 aa12.13□□□□□ -0.47
SHKBP1-211ENST00000595945 CEACAM6P40199 344 aa12.13□□□□□ -0.47
SHKBP1-211ENST00000595945 DEFB113Q30KQ7 82 aa12.13□□□□□ -0.47
SHKBP1-211ENST00000595945 HEPN1Q6WQI6 88 aa12.13□□□□□ -0.47
SHKBP1-211ENST00000595945 SLC25A42Q86VD7 318 aa12.13□□□□□ -0.47
SHKBP1-211ENST00000595945 NINJ1Q92982 152 aa12.13□□□□□ -0.47
SHKBP1-211ENST00000595945 ZNF714Q96N38 554 aa12.13□□□□□ -0.47
SHKBP1-211ENST00000595945 SCGB3A2Q96PL1 93 aa12.13□□□□□ -0.47
SHKBP1-211ENST00000595945 RTBDNQ9BSG5 229 aaPredicted RBP12.13□□□□□ -0.47
SHKBP1-211ENST00000595945 RSRP1Q9BUV0 290 aa12.13□□□□□ -0.47
SHKBP1-211ENST00000595945 SSBP3Q9BWW4 388 aaPredicted RBP12.13□□□□□ -0.47
SHKBP1-211ENST00000595945 GAL3ST2Q9H3Q3 398 aa12.13□□□□□ -0.47
SHKBP1-211ENST00000595945 C5orf66Q9H5L9 145 aa12.13□□□□□ -0.47
SHKBP1-211ENST00000595945 GFOD1Q9NXC2 390 aa12.13□□□□□ -0.47
SHKBP1-211ENST00000595945 RDH8Q9NYR8 311 aa12.13□□□□□ -0.47
SHKBP1-211ENST00000595945 CR1P17927 2039 aa12.13□□□□□ -0.47
SHKBP1-211ENST00000595945 IGHV4-30-2A0A087WSY4 118 aa12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 IGHV3-43A0A0B4J1X8 118 aa12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 C17orf98A8MV24 154 aa12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 HSPA12AO43301 675 aa12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 YPEL1O60688 119 aa12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 PRAF2O60831 178 aa12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 MMP23AO75900 390 aa12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 DHFRP00374 187 aa12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 RLN1P04808 185 aa12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 IGHV3-43DP0DP04 118 aa12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 ANXA7P20073 488 aaKnown RBP12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 PPP1CCP36873 323 aaKnown RBP12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 RAB25P57735 213 aa12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 FXYD4P59646 89 aa12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 HERV-K104P61576 105 aa12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 GNB2P62879 340 aa12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 DHODHQ02127 395 aa12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 TATDN3Q17R31 274 aa12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 ESCO2Q56NI9 601 aa12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 C11orf42Q8N5U0 333 aa12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 ZFAND1Q8TCF1 268 aa12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 FAM216AQ8WUB2 273 aa12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 TMEM230Q96A57 120 aa12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 DACT3Q96B18 629 aaPredicted RBP12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 YPEL2Q96QA6 119 aa12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 OR2S2Q9NQN1 319 aa12.12□□□□□ -0.47
SHKBP1-211ENST00000595945 ITPR3Q14573 2671 aa12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 IGHV4-61A0A0C4DH41 118 aa12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 ITGB1BP1O14713 200 aa12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 PHF1O43189 567 aaPredicted RBP12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 PGAM2P15259 253 aa12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 SLC25A16P16260 332 aa12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 OMGP23515 440 aa12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 ZFP36P26651 326 aaKnown RBP12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 PAX2Q02962 417 aa12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 BAMBIQ13145 260 aa12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 MORN2Q502X0 79 aa12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 PRAMEF5Q5TYX0 476 aa12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 CD276Q5ZPR3 534 aa12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 FAHD2BQ6P2I3 314 aaPredicted RBP12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 GLDNQ6ZMI3 551 aaPredicted RBP12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 SLC38A6Q8IZM9 456 aa12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 ZNF439Q8NDP4 499 aa12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 OR10V1Q8NGI7 309 aa12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 TOMM40LQ969M1 308 aa12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 RAB39BQ96DA2 213 aa12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 FAHD2AQ96GK7 314 aa12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 ZNF486Q96H40 463 aaPredicted RBP12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 DMRTB1Q96MA1 342 aa12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 GHITMQ9H3K2 345 aa12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 POLR3KQ9Y2Y1 108 aaPredicted RBP12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 ALG5Q9Y673 324 aa12.11□□□□□ -0.47
SHKBP1-211ENST00000595945 ASH1LQ9NR48 2969 aaKnown RBP12.1□□□□□ -0.47
SHKBP1-211ENST00000595945 LOC105371242A0A075B767 164 aa12.1□□□□□ -0.47
SHKBP1-211ENST00000595945 A0A096LNT2 108 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms