RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 TMEM50BP56557 158 aa12.56□□□□□ -0.4
LIG3-215ENST00000592690 HMGN3Q15651 99 aa12.56□□□□□ -0.4
LIG3-215ENST00000592690 TMEM95Q3KNT9 176 aa12.56□□□□□ -0.4
LIG3-215ENST00000592690 TMEM30BQ3MIR4 351 aa12.56□□□□□ -0.4
LIG3-215ENST00000592690 Q3ZCU0 254 aa12.56□□□□□ -0.4
LIG3-215ENST00000592690 HIST2H2BDQ6DRA6 164 aa12.56□□□□□ -0.4
LIG3-215ENST00000592690 KLHDC1Q8N7A1 406 aa12.56□□□□□ -0.4
LIG3-215ENST00000592690 C8orf31Q8N9H6 132 aa12.56□□□□□ -0.4
LIG3-215ENST00000592690 OR52L2PQ8NGH6 319 aa12.56□□□□□ -0.4
LIG3-215ENST00000592690 CAPSLQ8WWF8 208 aa12.56□□□□□ -0.4
LIG3-215ENST00000592690 OCSTAMPQ9BR26 566 aa12.56□□□□□ -0.4
LIG3-215ENST00000592690 HDHD3Q9BSH5 251 aaPredicted RBP12.56□□□□□ -0.4
LIG3-215ENST00000592690 PRSS22Q9GZN4 317 aa12.56□□□□□ -0.4
LIG3-215ENST00000592690 OR51E2Q9H255 320 aa12.56□□□□□ -0.4
LIG3-215ENST00000592690 LIN7BQ9HAP6 207 aa12.56□□□□□ -0.4
LIG3-215ENST00000592690 OR2S2Q9NQN1 319 aa12.56□□□□□ -0.4
LIG3-215ENST00000592690 KCNIP1Q9NZI2 227 aa12.56□□□□□ -0.4
LIG3-215ENST00000592690 AK3Q9UIJ7 227 aa12.56□□□□□ -0.4
LIG3-215ENST00000592690 TRRAPQ9Y4A5 3859 aa12.56□□□□□ -0.4
LIG3-215ENST00000592690 FAM90A9PA6NNJ1 464 aa12.55□□□□□ -0.4
LIG3-215ENST00000592690 OR2F2O95006 317 aa12.55□□□□□ -0.4
LIG3-215ENST00000592690 SNRNP70P08621 437 aaKnown RBP12.55□□□□□ -0.4
LIG3-215ENST00000592690 RAB7AP51149 207 aa12.55□□□□□ -0.4
LIG3-215ENST00000592690 ZNF816Q0VGE8 651 aaPredicted RBP12.55□□□□□ -0.4
LIG3-215ENST00000592690 CT45A1Q5HYN5 189 aa12.55□□□□□ -0.4
LIG3-215ENST00000592690 ZNF880Q6PDB4 577 aa12.55□□□□□ -0.4
LIG3-215ENST00000592690 SLC25A48Q6ZT89 311 aaKnown RBP12.55□□□□□ -0.4
LIG3-215ENST00000592690 C16orf82Q7Z2V1 217 aa12.55□□□□□ -0.4
LIG3-215ENST00000592690 ZNF554Q86TJ5 538 aa12.55□□□□□ -0.4
LIG3-215ENST00000592690 OR8H3Q8N146 312 aa12.55□□□□□ -0.4
LIG3-215ENST00000592690 CT45A3Q8NHU0 189 aa12.55□□□□□ -0.4
LIG3-215ENST00000592690 SETD6Q8TBK2 473 aa12.55□□□□□ -0.4
LIG3-215ENST00000592690 ST6GALNAC6Q969X2 333 aa12.55□□□□□ -0.4
LIG3-215ENST00000592690 ARHGAP5-AS1Q96IT6 56 aa12.55□□□□□ -0.4
LIG3-215ENST00000592690 RBM14Q96PK6 669 aaKnown RBP12.55□□□□□ -0.4
LIG3-215ENST00000592690 PECRQ9BY49 303 aa12.55□□□□□ -0.4
LIG3-215ENST00000592690 CHMP1AQ9HD42 196 aaPredicted RBP12.55□□□□□ -0.4
LIG3-215ENST00000592690 HSF4Q9ULV5 492 aa12.55□□□□□ -0.4
LIG3-215ENST00000592690 WNK1Q9H4A3 2382 aa12.55□□□□□ -0.4
LIG3-215ENST00000592690 IGHV1-3A0A0C4DH29 117 aa12.54□□□□□ -0.4
LIG3-215ENST00000592690 SH2D7A6NKC9 451 aaPredicted RBP12.54□□□□□ -0.4
LIG3-215ENST00000592690 AMY1AP04745 511 aa12.54□□□□□ -0.4
LIG3-215ENST00000592690 AMY2AP04746 511 aa12.54□□□□□ -0.4
LIG3-215ENST00000592690 VSIG10L2P0DP72 767 aa12.54□□□□□ -0.4
LIG3-215ENST00000592690 SLC2A2P11168 524 aaPredicted RBP12.54□□□□□ -0.4
LIG3-215ENST00000592690 PPP1CCP36873 323 aaKnown RBP12.54□□□□□ -0.4
LIG3-215ENST00000592690 MOGAT2Q3SYC2 334 aa12.54□□□□□ -0.4
LIG3-215ENST00000592690 MORN2Q502X0 79 aa12.54□□□□□ -0.4
LIG3-215ENST00000592690 PLAC9Q5JTB6 97 aa12.54□□□□□ -0.4
LIG3-215ENST00000592690 C11orf88Q6PI97 169 aa12.54□□□□□ -0.4
LIG3-215ENST00000592690 JPT1Q9UK76 154 aa12.54□□□□□ -0.4
LIG3-215ENST00000592690 RAB22AQ9UL26 194 aa12.54□□□□□ -0.4
LIG3-215ENST00000592690 SSR3Q9UNL2 185 aa12.54□□□□□ -0.4
LIG3-215ENST00000592690 IGHV3-72A0A0B4J1Y9 119 aa12.53□□□□□ -0.4
LIG3-215ENST00000592690 IGKV1D-33P01593 117 aa12.53□□□□□ -0.4
LIG3-215ENST00000592690 IGKV1-33P01594 117 aa12.53□□□□□ -0.4
LIG3-215ENST00000592690 GAPDHP04406 335 aaKnown RBP12.53□□□□□ -0.4
LIG3-215ENST00000592690 FAM106CPP0CH98 169 aa12.53□□□□□ -0.4
LIG3-215ENST00000592690 GADD45AP24522 165 aa12.53□□□□□ -0.4
LIG3-215ENST00000592690 IL3RAP26951 378 aa12.53□□□□□ -0.4
LIG3-215ENST00000592690 HTD2P86397 168 aa12.53□□□□□ -0.4
LIG3-215ENST00000592690 HERPUD1Q15011 391 aa12.53□□□□□ -0.4
LIG3-215ENST00000592690 ARSJQ5FYB0 599 aaPredicted RBP12.53□□□□□ -0.4
LIG3-215ENST00000592690 Q6ZTK2 550 aa12.53□□□□□ -0.4
LIG3-215ENST00000592690 MOB3BQ86TA1 216 aa12.53□□□□□ -0.4
LIG3-215ENST00000592690 THNSL2Q86YJ6 484 aa12.53□□□□□ -0.4
LIG3-215ENST00000592690 C11orf44Q8N8P7 122 aa12.53□□□□□ -0.4
LIG3-215ENST00000592690 DTX3Q8N9I9 347 aa12.53□□□□□ -0.4
LIG3-215ENST00000592690 OR56B1Q8NGI3 324 aa12.53□□□□□ -0.4
LIG3-215ENST00000592690 RTN4IP1Q8WWV3 396 aaPredicted RBP12.53□□□□□ -0.4
LIG3-215ENST00000592690 GALMQ96C23 342 aa12.53□□□□□ -0.4
LIG3-215ENST00000592690 AKR1E2Q96JD6 320 aa12.53□□□□□ -0.4
LIG3-215ENST00000592690 CHCHD6Q9BRQ6 235 aa12.53□□□□□ -0.4
LIG3-215ENST00000592690 RNF167Q9H6Y7 350 aa12.53□□□□□ -0.4
LIG3-215ENST00000592690 TRBV6-6A0A0A6YYG2 114 aa12.52□□□□□ -0.41
LIG3-215ENST00000592690 CD36P16671 472 aa12.52□□□□□ -0.41
LIG3-215ENST00000592690 TMEM11P17152 192 aa12.52□□□□□ -0.41
LIG3-215ENST00000592690 RANBP1P43487 201 aa12.52□□□□□ -0.41
LIG3-215ENST00000592690 VDAC2P45880 294 aaPredicted RBP12.52□□□□□ -0.41
LIG3-215ENST00000592690 ZNF137PP52743 207 aa12.52□□□□□ -0.41
LIG3-215ENST00000592690 HES1Q14469 280 aa12.52□□□□□ -0.41
LIG3-215ENST00000592690 HNF4GQ14541 408 aa12.52□□□□□ -0.41
LIG3-215ENST00000592690 ABCA11PQ4W5N1 156 aa12.52□□□□□ -0.41
LIG3-215ENST00000592690 TREML4Q6UXN2 200 aa12.52□□□□□ -0.41
LIG3-215ENST00000592690 MOB1BQ7L9L4 216 aa12.52□□□□□ -0.41
LIG3-215ENST00000592690 IL1F10Q8WWZ1 152 aa12.52□□□□□ -0.41
LIG3-215ENST00000592690 RBMXL1Q96E39 390 aaKnown RBP12.52□□□□□ -0.41
LIG3-215ENST00000592690 ABHD14AQ9BUJ0 271 aa12.52□□□□□ -0.41
LIG3-215ENST00000592690 KCNK7Q9Y2U2 307 aa12.52□□□□□ -0.41
LIG3-215ENST00000592690 MOB4Q9Y3A3 225 aa12.52□□□□□ -0.41
LIG3-215ENST00000592690 VWFP04275 2813 aa12.52□□□□□ -0.41
LIG3-215ENST00000592690 CMYA5Q8N3K9 4069 aa12.52□□□□□ -0.41
LIG3-215ENST00000592690 LOC100506127A0A0U1RQW1 187 aa12.51□□□□□ -0.41
LIG3-215ENST00000592690 NOTOA8MTQ0 251 aa12.51□□□□□ -0.41
LIG3-215ENST00000592690 M0QZ24 198 aa12.51□□□□□ -0.41
LIG3-215ENST00000592690 YPEL1O60688 119 aa12.51□□□□□ -0.41
LIG3-215ENST00000592690 TNFAIP8O95379 198 aa12.51□□□□□ -0.41
LIG3-215ENST00000592690 CLEC2LP0C7M8 214 aa12.51□□□□□ -0.41
LIG3-215ENST00000592690 RAB6AP20340 208 aa12.51□□□□□ -0.41
LIG3-215ENST00000592690 SDC2P34741 201 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms