RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 E5RGE8 158 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 F5H0A9 414 aaPredicted RBP11.87□□□□□ -0.51
LIG3-205ENST00000585941 K7N7A8 449 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 SPDEFO95238 335 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 HBZP02008 142 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 VDAC1P21796 283 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 GLIPR1P48060 266 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 HTD2P86397 168 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 ANGPTL6Q8NI99 470 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 LHFPL5Q8TAF8 219 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 STOML3Q8TAV4 291 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 ZNF471Q9BX82 626 aaPredicted RBP11.87□□□□□ -0.51
LIG3-205ENST00000585941 EGLN1Q9GZT9 426 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 LIN7CQ9NUP9 197 aaKnown RBP11.87□□□□□ -0.51
LIG3-205ENST00000585941 METRNQ9UJH8 293 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 PPP1R3CQ9UQK1 317 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 NSG2Q9Y328 171 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 A0A1B0GW55 424 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 CLEC18AA5D8T8 446 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 ST8SIA3O43173 380 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 SERPINE2P07093 398 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 DUX4L2P0CJ85 424 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 DUX4L3P0CJ86 424 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 DUX4L4P0CJ87 422 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 DUX4L5P0CJ88 424 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 DUX4L6P0CJ89 424 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 DUX4L7P0CJ90 424 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 MUC1P15941 1255 aaPredicted RBP11.87□□□□□ -0.51
LIG3-205ENST00000585941 EIF5AP63241 154 aaKnown RBP11.87□□□□□ -0.51
LIG3-205ENST00000585941 CR1LQ2VPA4 569 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 THOC7Q6I9Y2 204 aaKnown RBP11.87□□□□□ -0.51
LIG3-205ENST00000585941 CLEC18CQ8NCF0 446 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 OR1L1Q8NH94 360 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 RRNAD1Q96FB5 475 aaKnown RBP11.87□□□□□ -0.51
LIG3-205ENST00000585941 SDSLQ96GA7 329 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 DUX4Q9UBX2 424 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 AUP1Q9Y679 476 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 ICE1Q9Y2F5 2266 aa11.86□□□□□ -0.51
LIG3-205ENST00000585941 CACNA1DQ01668 2161 aa11.86□□□□□ -0.51
LIG3-205ENST00000585941 ODAMA1E959 279 aa11.86□□□□□ -0.51
LIG3-205ENST00000585941 TMEM8BA6NDV4 472 aa11.86□□□□□ -0.51
LIG3-205ENST00000585941 MBPP02686 304 aaPredicted RBP11.86□□□□□ -0.51
LIG3-205ENST00000585941 SLC25A6P12236 298 aa11.86□□□□□ -0.51
LIG3-205ENST00000585941 SPRNQ5BIV9 151 aa11.86□□□□□ -0.51
LIG3-205ENST00000585941 BEX5Q5H9J7 111 aa11.86□□□□□ -0.51
LIG3-205ENST00000585941 ADAM5Q6NVV9 412 aa11.86□□□□□ -0.51
LIG3-205ENST00000585941 ALKAL2Q6UX46 152 aa11.86□□□□□ -0.51
LIG3-205ENST00000585941 ZNF645Q8N7E2 425 aa11.86□□□□□ -0.51
LIG3-205ENST00000585941 MRGPRDQ8TDS7 321 aa11.86□□□□□ -0.51
LIG3-205ENST00000585941 ARL11Q969Q4 196 aa11.86□□□□□ -0.51
LIG3-205ENST00000585941 FAM234AQ9H0X4 552 aa11.86□□□□□ -0.51
LIG3-205ENST00000585941 SLC25A32Q9H2D1 315 aa11.86□□□□□ -0.51
LIG3-205ENST00000585941 PLEKHF2Q9H8W4 249 aa11.86□□□□□ -0.51
LIG3-205ENST00000585941 OR6C3Q9NZP0 311 aa11.86□□□□□ -0.51
LIG3-205ENST00000585941 KCNS2Q9ULS6 477 aa11.86□□□□□ -0.51
LIG3-205ENST00000585941 DYSFO75923 2080 aa11.85□□□□□ -0.51
LIG3-205ENST00000585941 K7EPK0 472 aa11.85□□□□□ -0.51
LIG3-205ENST00000585941 CD3EP07766 207 aa11.85□□□□□ -0.51
LIG3-205ENST00000585941 OR8U9P0C7N5 309 aa11.85□□□□□ -0.51
LIG3-205ENST00000585941 TPT1P13693 172 aaKnown RBP11.85□□□□□ -0.51
LIG3-205ENST00000585941 P2RX3P56373 397 aa11.85□□□□□ -0.51
LIG3-205ENST00000585941 GPR157Q5UAW9 335 aa11.85□□□□□ -0.51
LIG3-205ENST00000585941 STUMQ69YW2 141 aa11.85□□□□□ -0.51
LIG3-205ENST00000585941 FOXRED2Q8IWF2 684 aa11.85□□□□□ -0.51
LIG3-205ENST00000585941 C1orf87Q8N0U7 546 aa11.85□□□□□ -0.51
LIG3-205ENST00000585941 FAM71E2Q8N5Q1 922 aa11.85□□□□□ -0.51
LIG3-205ENST00000585941 KDF1Q8NAX2 398 aaPredicted RBP11.85□□□□□ -0.51
LIG3-205ENST00000585941 OR4D5Q8NGN0 318 aa11.85□□□□□ -0.51
LIG3-205ENST00000585941 OR13A1Q8NGR1 328 aa11.85□□□□□ -0.51
LIG3-205ENST00000585941 OR8U1Q8NH10 309 aa11.85□□□□□ -0.51
LIG3-205ENST00000585941 MED9Q9NWA0 146 aa11.85□□□□□ -0.51
LIG3-205ENST00000585941 LSM5Q9Y4Y9 91 aaKnown RBP11.85□□□□□ -0.51
LIG3-205ENST00000585941 POMT1Q9Y6A1 747 aa11.85□□□□□ -0.51
LIG3-205ENST00000585941 IGHV3OR15-7A0A075B7D8 119 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 SHISA9B4DS77 424 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 TNFSF12O43508 249 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 SCGB1D2O95969 90 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 IGLV2-14P01704 120 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 RPL12P30050 165 aaKnown RBP11.84□□□□□ -0.51
LIG3-205ENST00000585941 CD80P33681 288 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 HOXA4Q00056 320 aaPredicted RBP11.84□□□□□ -0.51
LIG3-205ENST00000585941 TLE1Q04724 770 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 EDDM3AQ14507 147 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 GNMTQ14749 295 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 NMSQ5H8A3 153 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 TEX36Q5VZQ5 186 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 DRAM1Q8N682 238 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 TCTEX1D1Q8N7M0 179 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 OR51H1Q8NH63 302 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 EDARADDQ8WWZ3 215 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 C14orf79Q96F83 325 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 PLPPR2Q96GM1 343 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 MS4A5Q9H3V2 200 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 ZNF665Q9H7R5 613 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 OR2S2Q9NQN1 319 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 ZC4H2Q9NQZ6 224 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 FAM212BQ9NTI7 297 aaPredicted RBP11.84□□□□□ -0.51
LIG3-205ENST00000585941 JPT1Q9UK76 154 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 NKX2-6A6NCS4 301 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 C15orf65H3BRN8 121 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms