RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 MOB4Q9Y3A3 225 aa19.06■□□□□ 0.64
SHMT1-206ENST00000579558 V9GY05 133 aa19.06■□□□□ 0.64
SHMT1-206ENST00000579558 MEGF8Q7Z7M0 2845 aa19.06■□□□□ 0.64
SHMT1-206ENST00000579558 A0A0A6YYD4 124 aa19.05■□□□□ 0.64
SHMT1-206ENST00000579558 IGHV1-3A0A0C4DH29 117 aa19.05■□□□□ 0.64
SHMT1-206ENST00000579558 SH2D7A6NKC9 451 aaPredicted RBP19.05■□□□□ 0.64
SHMT1-206ENST00000579558 AMY1AP04745 511 aa19.05■□□□□ 0.64
SHMT1-206ENST00000579558 AMY2AP04746 511 aa19.05■□□□□ 0.64
SHMT1-206ENST00000579558 LPLP06858 475 aa19.05■□□□□ 0.64
SHMT1-206ENST00000579558 CD28P10747 220 aa19.05■□□□□ 0.64
SHMT1-206ENST00000579558 TMEM11P17152 192 aa19.05■□□□□ 0.64
SHMT1-206ENST00000579558 PSMD7P51665 324 aa19.05■□□□□ 0.64
SHMT1-206ENST00000579558 CLDN12P56749 244 aa19.05■□□□□ 0.64
SHMT1-206ENST00000579558 SLC25A48Q6ZT89 311 aaKnown RBP19.05■□□□□ 0.64
SHMT1-206ENST00000579558 OR51D1Q8NGF3 324 aa19.05■□□□□ 0.64
SHMT1-206ENST00000579558 FAM110DQ8TAY7 271 aaPredicted RBP19.05■□□□□ 0.64
SHMT1-206ENST00000579558 WIPF2Q8TF74 440 aaPredicted RBP19.05■□□□□ 0.64
SHMT1-206ENST00000579558 YTHDF1Q9BYJ9 559 aaKnown RBP19.05■□□□□ 0.64
SHMT1-206ENST00000579558 OR2S2Q9NQN1 319 aa19.05■□□□□ 0.64
SHMT1-206ENST00000579558 PLEKHJ1Q9NW61 149 aa19.05■□□□□ 0.64
SHMT1-206ENST00000579558 IGKV1D-33P01593 117 aa19.04■□□□□ 0.64
SHMT1-206ENST00000579558 IGKV1-33P01594 117 aa19.04■□□□□ 0.64
SHMT1-206ENST00000579558 RANBP1P43487 201 aa19.04■□□□□ 0.64
SHMT1-206ENST00000579558 HNF4GQ14541 408 aa19.04■□□□□ 0.64
SHMT1-206ENST00000579558 CT45A1Q5HYN5 189 aa19.04■□□□□ 0.64
SHMT1-206ENST00000579558 C9orf152Q5JTZ5 239 aa19.04■□□□□ 0.64
SHMT1-206ENST00000579558 UBE2UQ5VVX9 321 aa19.04■□□□□ 0.64
SHMT1-206ENST00000579558 CD200R1LQ6Q8B3 271 aa19.04■□□□□ 0.64
SHMT1-206ENST00000579558 C5orf24Q7Z6I8 188 aa19.04■□□□□ 0.64
SHMT1-206ENST00000579558 SPARTQ8N0X7 666 aa19.04■□□□□ 0.64
SHMT1-206ENST00000579558 CT45A3Q8NHU0 189 aa19.04■□□□□ 0.64
SHMT1-206ENST00000579558 FAM3DQ96BQ1 224 aa19.04■□□□□ 0.64
SHMT1-206ENST00000579558 CHMP1AQ9HD42 196 aaPredicted RBP19.04■□□□□ 0.64
SHMT1-206ENST00000579558 VWFP04275 2813 aa19.04■□□□□ 0.64
SHMT1-206ENST00000579558 IGHV3-72A0A0B4J1Y9 119 aa19.03■□□□□ 0.64
SHMT1-206ENST00000579558 TRDV1A0A1B0GX56 115 aa19.03■□□□□ 0.64
SHMT1-206ENST00000579558 PDCD5O14737 125 aa19.03■□□□□ 0.64
SHMT1-206ENST00000579558 SOCS1O15524 211 aa19.03■□□□□ 0.64
SHMT1-206ENST00000579558 MYL9P24844 172 aa19.03■□□□□ 0.64
SHMT1-206ENST00000579558 ZNF134P52741 427 aa19.03■□□□□ 0.64
SHMT1-206ENST00000579558 GNMTQ14749 295 aa19.03■□□□□ 0.64
SHMT1-206ENST00000579558 HES5Q5TA89 166 aa19.03■□□□□ 0.64
SHMT1-206ENST00000579558 LYG1Q8N1E2 194 aa19.03■□□□□ 0.64
SHMT1-206ENST00000579558 OR52L2PQ8NGH6 319 aa19.03■□□□□ 0.64
SHMT1-206ENST00000579558 RTN4IP1Q8WWV3 396 aaPredicted RBP19.03■□□□□ 0.64
SHMT1-206ENST00000579558 ST6GALNAC6Q969X2 333 aa19.03■□□□□ 0.64
SHMT1-206ENST00000579558 JPT1Q9UK76 154 aa19.03■□□□□ 0.64
SHMT1-206ENST00000579558 LRRC42Q9Y546 428 aa19.03■□□□□ 0.64
SHMT1-206ENST00000579558 TRAV1-2A0A0B4J238 106 aa19.02■□□□□ 0.64
SHMT1-206ENST00000579558 PSMB9P28065 219 aa19.02■□□□□ 0.64
SHMT1-206ENST00000579558 HMGN3Q15651 99 aa19.02■□□□□ 0.64
SHMT1-206ENST00000579558 MORN2Q502X0 79 aa19.02■□□□□ 0.64
SHMT1-206ENST00000579558 FAM89BQ8N5H3 189 aa19.02■□□□□ 0.64
SHMT1-206ENST00000579558 SETD6Q8TBK2 473 aa19.02■□□□□ 0.64
SHMT1-206ENST00000579558 FCGR1BQ92637 280 aa19.02■□□□□ 0.64
SHMT1-206ENST00000579558 GALMQ96C23 342 aa19.02■□□□□ 0.64
SHMT1-206ENST00000579558 STEAP1Q9UHE8 339 aa19.02■□□□□ 0.64
SHMT1-206ENST00000579558 RRP15Q9Y3B9 282 aaKnown RBP19.02■□□□□ 0.64
SHMT1-206ENST00000579558 SHISA3A0PJX4 238 aa19.01■□□□□ 0.63
SHMT1-206ENST00000579558 WIPF1O43516 503 aa19.01■□□□□ 0.63
SHMT1-206ENST00000579558 NAPSAO96009 420 aa19.01■□□□□ 0.63
SHMT1-206ENST00000579558 PPP1CCP36873 323 aaKnown RBP19.01■□□□□ 0.63
SHMT1-206ENST00000579558 VEGFCP49767 419 aa19.01■□□□□ 0.63
SHMT1-206ENST00000579558 ZNF137PP52743 207 aa19.01■□□□□ 0.63
SHMT1-206ENST00000579558 HTD2P86397 168 aa19.01■□□□□ 0.63
SHMT1-206ENST00000579558 NSUN5P1Q3KNT7 163 aa19.01■□□□□ 0.63
SHMT1-206ENST00000579558 C2orf76Q3KRA6 126 aa19.01■□□□□ 0.63
SHMT1-206ENST00000579558 STEAP3Q658P3 488 aa19.01■□□□□ 0.63
SHMT1-206ENST00000579558 TGIF2LXQ8IUE1 241 aa19.01■□□□□ 0.63
SHMT1-206ENST00000579558 IZUMO1Q8IYV9 350 aa19.01■□□□□ 0.63
SHMT1-206ENST00000579558 ABRACLQ9P1F3 81 aa19.01■□□□□ 0.63
SHMT1-206ENST00000579558 CMYA5Q8N3K9 4069 aa19■□□□□ 0.63
SHMT1-206ENST00000579558 TXNL1O43396 289 aa19■□□□□ 0.63
SHMT1-206ENST00000579558 GALP22466 123 aa19■□□□□ 0.63
SHMT1-206ENST00000579558 OR10A3P58181 314 aa19■□□□□ 0.63
SHMT1-206ENST00000579558 EBI3Q14213 229 aa19■□□□□ 0.63
SHMT1-206ENST00000579558 C22orf42Q6IC83 251 aa19■□□□□ 0.63
SHMT1-206ENST00000579558 MOB1BQ7L9L4 216 aa19■□□□□ 0.63
SHMT1-206ENST00000579558 CENPVQ7Z7K6 275 aaPredicted RBP19■□□□□ 0.63
SHMT1-206ENST00000579558 C5orf56Q8N8D9 126 aa19■□□□□ 0.63
SHMT1-206ENST00000579558 OR5AU1Q8NGC0 362 aa19■□□□□ 0.63
SHMT1-206ENST00000579558 CITED2Q99967 270 aaPredicted RBP19■□□□□ 0.63
SHMT1-206ENST00000579558 ABHD14AQ9BUJ0 271 aa19■□□□□ 0.63
SHMT1-206ENST00000579558 AK3Q9UIJ7 227 aa19■□□□□ 0.63
SHMT1-206ENST00000579558 HSF4Q9ULV5 492 aa19■□□□□ 0.63
SHMT1-206ENST00000579558 TMEM272A0A1B0GTI8 110 aa18.99■□□□□ 0.63
SHMT1-206ENST00000579558 FOXI3A8MTJ6 420 aaPredicted RBP18.99■□□□□ 0.63
SHMT1-206ENST00000579558 FGF16O43320 207 aa18.99■□□□□ 0.63
SHMT1-206ENST00000579558 RGS11O94810 467 aa18.99■□□□□ 0.63
SHMT1-206ENST00000579558 RAB3BP20337 219 aa18.99■□□□□ 0.63
SHMT1-206ENST00000579558 ZNF880Q6PDB4 577 aa18.99■□□□□ 0.63
SHMT1-206ENST00000579558 ZNF773Q6PK81 442 aa18.99■□□□□ 0.63
SHMT1-206ENST00000579558 Q6ZPA2 131 aa18.99■□□□□ 0.63
SHMT1-206ENST00000579558 NDUFA11Q86Y39 141 aa18.99■□□□□ 0.63
SHMT1-206ENST00000579558 OR56B1Q8NGI3 324 aa18.99■□□□□ 0.63
SHMT1-206ENST00000579558 OR2T10Q8NGZ9 312 aa18.99■□□□□ 0.63
SHMT1-206ENST00000579558 IL1F10Q8WWZ1 152 aa18.99■□□□□ 0.63
SHMT1-206ENST00000579558 EAF1Q96JC9 268 aaPredicted RBP18.99■□□□□ 0.63
SHMT1-206ENST00000579558 HDHD3Q9BSH5 251 aaPredicted RBP18.99■□□□□ 0.63
SHMT1-206ENST00000579558 RIMS4Q9H426 269 aaPredicted RBP18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms