RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 FAM78BQ5VT40 261 aa9.36□□□□□ -0.91
CLK3-226ENST00000569406 BATF2Q8N1L9 274 aa9.36□□□□□ -0.91
CLK3-226ENST00000569406 OR4N2Q8NGD1 307 aa9.36□□□□□ -0.91
CLK3-226ENST00000569406 HARBI1Q96MB7 349 aa9.36□□□□□ -0.91
CLK3-226ENST00000569406 FAM110AQ9BQ89 295 aa9.36□□□□□ -0.91
CLK3-226ENST00000569406 ZDHHC11Q9H8X9 412 aa9.36□□□□□ -0.91
CLK3-226ENST00000569406 CEBPZOSA8MTT3 80 aa9.36□□□□□ -0.91
CLK3-226ENST00000569406 ZNF43P17038 809 aa9.36□□□□□ -0.91
CLK3-226ENST00000569406 ATP6V0CP27449 155 aa9.36□□□□□ -0.91
CLK3-226ENST00000569406 AESQ08117 197 aa9.36□□□□□ -0.91
CLK3-226ENST00000569406 DEFB110Q30KQ9 67 aa9.36□□□□□ -0.91
CLK3-226ENST00000569406 TCF23Q7RTU1 214 aa9.36□□□□□ -0.91
CLK3-226ENST00000569406 OR51A4Q8NGJ6 313 aa9.36□□□□□ -0.91
CLK3-226ENST00000569406 OR4A5Q8NH83 315 aa9.36□□□□□ -0.91
CLK3-226ENST00000569406 FAM174AQ8TBP5 190 aa9.36□□□□□ -0.91
CLK3-226ENST00000569406 C5orf66Q9H5L9 145 aa9.36□□□□□ -0.91
CLK3-226ENST00000569406 CCKBRP32239 447 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 TMEM164Q5U3C3 297 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 SPATA31B1PQ5VZV4 182 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 Q6ZSR6 202 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 OOSP2Q86WS3 158 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 SMRP1Q8NCR6 262 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 ZNF524Q96C55 264 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 NPVFQ9HCQ7 196 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 LYRM4Q9HD34 91 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 RARRES3Q9UL19 164 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 MED12Q93074 2177 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 RBMXP38159 391 aaKnown RBP9.35□□□□□ -0.91
CLK3-226ENST00000569406 AMTP48728 403 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 PRR31Q5SQ13 230 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 FAM58AQ8N1B3 248 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 CA13Q8N1Q1 262 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 PNKDQ8N490 385 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 SLC2A12Q8TD20 617 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 TMEM230Q96A57 120 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 FGGYQ96C11 551 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 C19orf24Q9BVV8 132 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 RBM24Q9BX46 236 aaKnown RBP9.35□□□□□ -0.91
CLK3-226ENST00000569406 PEF1Q9UBV8 284 aaKnown RBP9.35□□□□□ -0.91
CLK3-226ENST00000569406 PSG8Q9UQ74 426 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 TNFRSF18Q9Y5U5 241 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 HS3ST3A1Q9Y663 406 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 A4D1N5 150 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 SDCBPO00560 298 aaPredicted RBP9.35□□□□□ -0.91
CLK3-226ENST00000569406 IGLV3-19P01714 112 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 CRISP2P16562 243 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 FABP6P51161 128 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 TGFBR3Q03167 851 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 FAM53BQ14153 422 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 ZNF542PQ5EBM4 170 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 KCNIP4Q6PIL6 250 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 SLC37A2Q8TED4 501 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 UHRF2Q96PU4 802 aa9.35□□□□□ -0.91
CLK3-226ENST00000569406 UBE2ZQ9H832 354 aaPredicted RBP9.35□□□□□ -0.91
CLK3-226ENST00000569406 FER1L5A0AVI2 2057 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 NKX2-6A6NCS4 301 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 GAGE12HA6NDE8 117 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 IFNA5P01569 189 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 GDF1P27539 372 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 ADMP35318 185 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 RBMXL1Q96E39 390 aaKnown RBP9.34□□□□□ -0.91
CLK3-226ENST00000569406 NAA38Q9BRA0 125 aaKnown RBP9.34□□□□□ -0.91
CLK3-226ENST00000569406 SRSF8Q9BRL6 282 aaKnown RBP9.34□□□□□ -0.91
CLK3-226ENST00000569406 SSBP4Q9BWG4 385 aaPredicted RBP9.34□□□□□ -0.91
CLK3-226ENST00000569406 DPRXA6NFQ7 191 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 TIAF1O95411 115 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 CLPSP04118 112 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 MRPS34P82930 218 aaKnown RBP9.34□□□□□ -0.91
CLK3-226ENST00000569406 ZNF154Q13106 437 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 PRDX4Q13162 271 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 GLYATL3Q5SZD4 288 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 LCN15Q6UWW0 184 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 Q6ZS52 159 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 MUC15Q8N387 334 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 LRRC61Q9BV99 259 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 CALHM2Q9HA72 323 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 CLDND1Q9NY35 253 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 MPDZO75970 2070 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 LOC102723971A0A1B0GUV8 181 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 H0Y8G0 127 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 HIST1H1CP16403 213 aaKnown RBP9.34□□□□□ -0.91
CLK3-226ENST00000569406 IL3RAP26951 378 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 OPRM1P35372 400 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 ALKBH6Q3KRA9 238 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 LINC00114Q6XXX2 140 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 TUSC5Q8IXB3 177 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 OR2I1PQ8NGU4 316 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 OR5B3Q8NH48 314 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 RTN4IP1Q8WWV3 396 aaPredicted RBP9.34□□□□□ -0.91
CLK3-226ENST00000569406 ZNF665Q9H7R5 613 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 NSG2Q9Y328 171 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 UFC1Q9Y3C8 167 aa9.34□□□□□ -0.91
CLK3-226ENST00000569406 LRRC3CA6NJW4 275 aa9.33□□□□□ -0.92
CLK3-226ENST00000569406 B5MCH6 92 aa9.33□□□□□ -0.92
CLK3-226ENST00000569406 KITLGP21583 273 aa9.33□□□□□ -0.92
CLK3-226ENST00000569406 OR2M3Q8NG83 312 aa9.33□□□□□ -0.92
CLK3-226ENST00000569406 CENPMQ9NSP4 180 aa9.33□□□□□ -0.92
CLK3-226ENST00000569406 PLEK2Q9NYT0 353 aa9.33□□□□□ -0.92
CLK3-226ENST00000569406 NUP210LQ5VU65 1888 aa9.33□□□□□ -0.92
CLK3-226ENST00000569406 RP1L1Q8IWN7 2480 aaPredicted RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 220 ms