RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 ZFAND1Q8TCF1 268 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 EEF1AKMT1Q8WVE0 214 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 SECTM1Q8WVN6 248 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 TMED6Q8WW62 240 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 ITLN2Q8WWU7 325 aaPredicted RBP2.29□□□□□ -2.04
VPS35-209ENST00000568642 C11orf40Q8WZ69 217 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 SFRP2Q96HF1 295 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 ST6GAL2Q96JF0 529 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 MAGEB18Q96M61 343 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 VAT1Q99536 393 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 RIOK2Q9BVS4 552 aaKnown RBP2.29□□□□□ -2.04
VPS35-209ENST00000568642 TAPBPLQ9BX59 468 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 TRIM15Q9C019 465 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 OR51E2Q9H255 320 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 DCSTAMPQ9H295 470 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 SPANXB1Q9NS25 103 aaPredicted RBP2.29□□□□□ -2.04
VPS35-209ENST00000568642 MARCH5Q9NX47 278 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 VPS29Q9UBQ0 182 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 ANXA10Q9UJ72 324 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 PAIP2BQ9ULR5 123 aaKnown RBP2.29□□□□□ -2.04
VPS35-209ENST00000568642 PRELID3BQ9Y3B1 194 aa2.29□□□□□ -2.04
VPS35-209ENST00000568642 SAA2-SAA4A0A096LPE2 208 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 IGKV1-8A0A0C4DH67 115 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 IGLV5-39A0A0G2JS06 123 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 IGSF23A1L1A6 192 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 TLCD2A6NGC4 264 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 E9PLD3 99 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 H7C417 338 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 C19orf84I3L1E1 186 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 J3QT63 122 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 K7N7A8 449 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 GPR31O00270 319 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 SSNA1O43805 119 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 MFSD11O43934 449 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 SNAP91O60641 907 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 PLIN3O60664 434 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 OR2B3O76000 313 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 TTC4O95801 387 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 AIFM1O95831 613 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 LALBAP00709 142 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 PFN1P07737 140 aaKnown RBP2.28□□□□□ -2.04
VPS35-209ENST00000568642 RBMY1A1P0DJD3 496 aaKnown RBP2.28□□□□□ -2.04
VPS35-209ENST00000568642 CT45A10P0DMU9 189 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 GABRA1P14867 456 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 CXCL2P19875 107 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 PRTN3P24158 256 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 AQP1P29972 269 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 S100A7P31151 101 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 CDKN2BP42772 138 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 RPL29P47914 159 aaKnown RBP2.28□□□□□ -2.04
VPS35-209ENST00000568642 GCLMP48507 274 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 GPM6AP51674 278 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 AP1S2P56377 157 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 TAS2R43P59537 309 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 CACNG7P62955 275 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 SLC35A1P78382 337 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 MRPS21P82921 87 aaKnown RBP2.28□□□□□ -2.04
VPS35-209ENST00000568642 PUDPQ08623 228 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 SLC10A7Q0GE19 358 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 SMAGPQ0VAQ4 97 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 FHL1Q13642 323 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 HIST3H3Q16695 136 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 DEFB109BQ30KR1 87 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 LCE1AQ5T7P2 110 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 STEAP4Q687X5 459 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 SUMO4Q6EEV6 95 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 MRGPRGQ86SM5 289 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 LRRTM1Q86UE6 522 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 SKA3Q8IX90 412 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 GPD1LQ8N335 351 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 FTMTQ8N4E7 242 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 SREK1IP1Q8N9Q2 155 aaPredicted RBP2.28□□□□□ -2.04
VPS35-209ENST00000568642 OR4F15Q8NGB8 312 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 OR6T1Q8NGN1 323 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 OR9A2Q8NGT5 310 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 OR6N1Q8NGY5 312 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 OR10J6PQ8NGY7 276 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 RASSF5Q8WWW0 418 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 TAF15Q92804 592 aaKnown RBP eCLIP2.28□□□□□ -2.04
VPS35-209ENST00000568642 IL22RA2Q969J5 263 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 PIK3IP1Q96FE7 263 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 IMP4Q96G21 291 aaKnown RBP2.28□□□□□ -2.04
VPS35-209ENST00000568642 SMARCD1Q96GM5 515 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 C9orf85Q96MD7 179 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 ZNF717Q9BY31 904 aaPredicted RBP2.28□□□□□ -2.04
VPS35-209ENST00000568642 SPNS1Q9H2V7 528 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 PARLQ9H300 379 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 TXNIPQ9H3M7 391 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 PANK3Q9H999 370 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 FKRPQ9H9S5 495 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 SLC7A10Q9NS82 523 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 RBFOX1Q9NWB1 397 aaKnown RBP2.28□□□□□ -2.04
VPS35-209ENST00000568642 MTFP1Q9UDX5 166 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 ASF1AQ9Y294 204 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 KCNE3Q9Y6H6 103 aa2.28□□□□□ -2.04
VPS35-209ENST00000568642 ABCA13Q86UQ4 5058 aa2.28□□□□□ -2.05
VPS35-209ENST00000568642 IGHV4OR15-8A0A075B7B6 117 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 A0A0G2JN53 185 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 A0A1W2PS18 150 aa2.27□□□□□ -2.05
VPS35-209ENST00000568642 ISPDA4D126 451 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms