RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 CA11O75493 328 aa12.61□□□□□ -0.39
CLN3-229ENST00000567963 GLAP06280 429 aa12.61□□□□□ -0.39
CLN3-229ENST00000567963 MGMTP16455 207 aa12.61□□□□□ -0.39
CLN3-229ENST00000567963 FUT3P21217 361 aa12.61□□□□□ -0.39
CLN3-229ENST00000567963 CDX1P47902 265 aaPredicted RBP12.61□□□□□ -0.39
CLN3-229ENST00000567963 FOXE3Q13461 319 aa12.61□□□□□ -0.39
CLN3-229ENST00000567963 CXorf66Q5JRM2 361 aaPredicted RBP12.61□□□□□ -0.39
CLN3-229ENST00000567963 SIGIRRQ6IA17 410 aa12.61□□□□□ -0.39
CLN3-229ENST00000567963 C11orf87Q6NUJ2 197 aa12.61□□□□□ -0.39
CLN3-229ENST00000567963 TRAT1Q6PIZ9 186 aa12.61□□□□□ -0.39
CLN3-229ENST00000567963 UNQ9370/PRO34162Q6UXP9 181 aa12.61□□□□□ -0.39
CLN3-229ENST00000567963 LCNL1Q6ZST4 164 aa12.61□□□□□ -0.39
CLN3-229ENST00000567963 PACRGLQ8N7B6 248 aa12.61□□□□□ -0.39
CLN3-229ENST00000567963 RNF152Q8N8N0 203 aa12.61□□□□□ -0.39
CLN3-229ENST00000567963 HSPB9Q9BQS6 159 aa12.61□□□□□ -0.39
CLN3-229ENST00000567963 C8orf4Q9NR00 106 aa12.61□□□□□ -0.39
CLN3-229ENST00000567963 EFCAB10A6NFE3 127 aa12.6□□□□□ -0.39
CLN3-229ENST00000567963 CRTAPO75718 401 aaPredicted RBP12.6□□□□□ -0.39
CLN3-229ENST00000567963 CD1AP06126 327 aa12.6□□□□□ -0.39
CLN3-229ENST00000567963 ELANEP08246 267 aa12.6□□□□□ -0.39
CLN3-229ENST00000567963 CELP19835 753 aa12.6□□□□□ -0.39
CLN3-229ENST00000567963 SOX6P35712 828 aa12.6□□□□□ -0.39
CLN3-229ENST00000567963 CFHR3Q02985 330 aa12.6□□□□□ -0.39
CLN3-229ENST00000567963 KIR2DS1Q14954 304 aa12.6□□□□□ -0.39
CLN3-229ENST00000567963 MORN2Q502X0 79 aa12.6□□□□□ -0.39
CLN3-229ENST00000567963 Q96M66 194 aa12.6□□□□□ -0.39
CLN3-229ENST00000567963 TAF9BQ9HBM6 251 aa12.6□□□□□ -0.39
CLN3-229ENST00000567963 OR2S2Q9NQN1 319 aa12.6□□□□□ -0.39
CLN3-229ENST00000567963 MBNL3Q9NUK0 354 aaKnown RBP12.6□□□□□ -0.39
CLN3-229ENST00000567963 CNOT2Q9NZN8 540 aaKnown RBP12.6□□□□□ -0.39
CLN3-229ENST00000567963 ZMAT5Q9UDW3 170 aaKnown RBP12.6□□□□□ -0.39
CLN3-229ENST00000567963 UBE2QL1A1L167 161 aa12.59□□□□□ -0.39
CLN3-229ENST00000567963 LANCL1O43813 399 aa12.59□□□□□ -0.39
CLN3-229ENST00000567963 GP2P55259 537 aaKnown RBP12.59□□□□□ -0.39
CLN3-229ENST00000567963 CD69Q07108 199 aa12.59□□□□□ -0.39
CLN3-229ENST00000567963 LAIR2Q6ISS4 152 aa12.59□□□□□ -0.39
CLN3-229ENST00000567963 NKAIN3Q8N8D7 197 aa12.59□□□□□ -0.39
CLN3-229ENST00000567963 OR8U1Q8NH10 309 aa12.59□□□□□ -0.39
CLN3-229ENST00000567963 CYYR1Q96J86 154 aa12.59□□□□□ -0.39
CLN3-229ENST00000567963 B9D2Q9BPU9 175 aa12.59□□□□□ -0.39
CLN3-229ENST00000567963 UQCC2Q9BRT2 126 aa12.59□□□□□ -0.39
CLN3-229ENST00000567963 IGHG4P01861 327 aa12.59□□□□□ -0.39
CLN3-229ENST00000567963 IGF1P05019 195 aa12.59□□□□□ -0.39
CLN3-229ENST00000567963 GNAO1P09471 354 aa12.59□□□□□ -0.39
CLN3-229ENST00000567963 WNT4P56705 351 aa12.59□□□□□ -0.39
CLN3-229ENST00000567963 RAB25P57735 213 aa12.59□□□□□ -0.39
CLN3-229ENST00000567963 DGCR2P98153 550 aa12.59□□□□□ -0.39
CLN3-229ENST00000567963 LSAMPQ13449 338 aa12.59□□□□□ -0.39
CLN3-229ENST00000567963 DEFB136Q30KP8 78 aa12.59□□□□□ -0.39
CLN3-229ENST00000567963 ZNF554Q86TJ5 538 aa12.59□□□□□ -0.39
CLN3-229ENST00000567963 PLCXD1Q9NUJ7 323 aa12.59□□□□□ -0.39
CLN3-229ENST00000567963 KCNIP1Q9NZI2 227 aa12.59□□□□□ -0.39
CLN3-229ENST00000567963 GHRLQ9UBU3 117 aa12.59□□□□□ -0.39
CLN3-229ENST00000567963 PSORS1C1Q9UIG5 152 aa12.59□□□□□ -0.39
CLN3-229ENST00000567963 KMT2CQ8NEZ4 4911 aaKnown RBP12.58□□□□□ -0.4
CLN3-229ENST00000567963 MYL12BO14950 172 aa12.58□□□□□ -0.4
CLN3-229ENST00000567963 PDCD6O75340 191 aa12.58□□□□□ -0.4
CLN3-229ENST00000567963 VDAC1P21796 283 aa12.58□□□□□ -0.4
CLN3-229ENST00000567963 MAPK3P27361 379 aaPredicted RBP12.58□□□□□ -0.4
CLN3-229ENST00000567963 DCTN2Q13561 401 aaKnown RBP12.58□□□□□ -0.4
CLN3-229ENST00000567963 AHSA2Q719I0 299 aa12.58□□□□□ -0.4
CLN3-229ENST00000567963 C5orf24Q7Z6I8 188 aa12.58□□□□□ -0.4
CLN3-229ENST00000567963 ODF3L1Q8IXM7 274 aa12.58□□□□□ -0.4
CLN3-229ENST00000567963 C8orf59Q8N0T1 100 aaPredicted RBP12.58□□□□□ -0.4
CLN3-229ENST00000567963 NANOGP1Q8N7R0 232 aa12.58□□□□□ -0.4
CLN3-229ENST00000567963 OR52L2PQ8NGH6 319 aa12.58□□□□□ -0.4
CLN3-229ENST00000567963 MRPL30Q8TCC3 161 aaKnown RBP12.58□□□□□ -0.4
CLN3-229ENST00000567963 THRSPQ92748 146 aa12.58□□□□□ -0.4
CLN3-229ENST00000567963 TFAP2CQ92754 450 aa12.58□□□□□ -0.4
CLN3-229ENST00000567963 FAM46BQ96A09 425 aa12.58□□□□□ -0.4
CLN3-229ENST00000567963 ZNF580Q9UK33 172 aa12.58□□□□□ -0.4
CLN3-229ENST00000567963 RAMP3O60896 148 aa12.57□□□□□ -0.4
CLN3-229ENST00000567963 SLC2A2P11168 524 aaPredicted RBP12.57□□□□□ -0.4
CLN3-229ENST00000567963 PSMB8P28062 276 aa12.57□□□□□ -0.4
CLN3-229ENST00000567963 HTD2P86397 168 aa12.57□□□□□ -0.4
CLN3-229ENST00000567963 GNMTQ14749 295 aa12.57□□□□□ -0.4
CLN3-229ENST00000567963 MMDQ15546 238 aa12.57□□□□□ -0.4
CLN3-229ENST00000567963 OR5M8Q8NGP6 311 aa12.57□□□□□ -0.4
CLN3-229ENST00000567963 FBLIM1Q8WUP2 373 aa12.57□□□□□ -0.4
CLN3-229ENST00000567963 KCTD7Q96MP8 289 aa12.57□□□□□ -0.4
CLN3-229ENST00000567963 CHCHD6Q9BRQ6 235 aa12.57□□□□□ -0.4
CLN3-229ENST00000567963 ABHD14AQ9BUJ0 271 aa12.57□□□□□ -0.4
CLN3-229ENST00000567963 ZNF107Q9UII5 783 aaPredicted RBP12.57□□□□□ -0.4
CLN3-229ENST00000567963 JPT1Q9UK76 154 aa12.57□□□□□ -0.4
CLN3-229ENST00000567963 YPEL1O60688 119 aa12.56□□□□□ -0.4
CLN3-229ENST00000567963 PPP1CCP36873 323 aaKnown RBP12.56□□□□□ -0.4
CLN3-229ENST00000567963 INSL4Q14641 139 aa12.56□□□□□ -0.4
CLN3-229ENST00000567963 RCN1Q15293 331 aa12.56□□□□□ -0.4
CLN3-229ENST00000567963 C6orf141Q5SZD1 244 aa12.56□□□□□ -0.4
CLN3-229ENST00000567963 BPIFB6Q8NFQ5 453 aa12.56□□□□□ -0.4
CLN3-229ENST00000567963 C4orf3Q8WVX3 66 aa12.56□□□□□ -0.4
CLN3-229ENST00000567963 RITA1Q96K30 269 aa12.56□□□□□ -0.4
CLN3-229ENST00000567963 YPEL2Q96QA6 119 aa12.56□□□□□ -0.4
CLN3-229ENST00000567963 CST11Q9H112 138 aa12.56□□□□□ -0.4
CLN3-229ENST00000567963 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.56□□□□□ -0.4
CLN3-229ENST00000567963 FKBP14Q9NWM8 211 aa12.56□□□□□ -0.4
CLN3-229ENST00000567963 OR5H8P0DN80 308 aa12.55□□□□□ -0.4
CLN3-229ENST00000567963 MYF6P23409 242 aa12.55□□□□□ -0.4
CLN3-229ENST00000567963 PPIFP30405 207 aaKnown RBP12.55□□□□□ -0.4
CLN3-229ENST00000567963 LUMP51884 338 aaPredicted RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms