RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 ERVS71-1P61550 626 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 HBG1P69891 147 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 HBG2P69892 147 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 TLE4Q04727 773 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 EIF4EBP1Q13541 118 aaPredicted RBP5.27□□□□□ -1.57
CLN3-223ENST00000566472 CLINT1Q14677 625 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 RHEBQ15382 184 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 ALKBH6Q3KRA9 238 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 AKR1C8PQ5T2L2 129 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 SP5Q6BEB4 398 aaPredicted RBP5.27□□□□□ -1.57
CLN3-223ENST00000566472 VWA1Q6PCB0 445 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 CLEC9AQ6UXN8 241 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 ZNF66Q6ZN08 573 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 BEND4Q6ZU67 534 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 BHLHA15Q7RTS1 189 aaPredicted RBP5.27□□□□□ -1.57
CLN3-223ENST00000566472 C5orf24Q7Z6I8 188 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 C11orf53Q8IXP5 236 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 GCNT2Q8N0V5 402 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 OR5C1Q8NGR4 320 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 OR51H1Q8NH63 302 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 PPP1R35Q8TAP8 253 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 TMEM171Q8WVE6 324 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 IL1F10Q8WWZ1 152 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 GALMQ96C23 342 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 RBMXL1Q96E39 390 aaKnown RBP5.27□□□□□ -1.57
CLN3-223ENST00000566472 LURAP1Q96LR2 239 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 TAAR6Q96RI8 345 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 PSMG3Q9BT73 122 aaPredicted RBP5.27□□□□□ -1.57
CLN3-223ENST00000566472 EGLN1Q9GZT9 426 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 SLC35B3Q9H1N7 401 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 SH3BGRL3Q9H299 93 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 NCOR1P1Q9H4R4 102 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 ZNF71Q9NQZ8 489 aaPredicted RBP5.27□□□□□ -1.57
CLN3-223ENST00000566472 CACNG5Q9UF02 275 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 TINAGQ9UJW2 476 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 KCNS2Q9ULS6 477 aa5.27□□□□□ -1.57
CLN3-223ENST00000566472 RBM7Q9Y580 266 aaKnown RBP5.27□□□□□ -1.57
CLN3-223ENST00000566472 KLF2Q9Y5W3 355 aaPredicted RBP5.27□□□□□ -1.57
CLN3-223ENST00000566472 IGHV2OR16-5A0A0B4J2B6 119 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 IGHV1-18A0A0C4DH31 117 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 C12orf77C9JDV5 145 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 C9JQL5 133 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 H0YL77 283 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 RAB29O14966 203 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 PPIHO43447 177 aaKnown RBP5.26□□□□□ -1.57
CLN3-223ENST00000566472 NDUFA2O43678 99 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 NDUFS6O75380 124 aaKnown RBP5.26□□□□□ -1.57
CLN3-223ENST00000566472 TNFSF13O75888 250 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 TSPAN9O75954 239 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 IGKV1-5P01602 117 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 HSPB1P04792 205 aaKnown RBP5.26□□□□□ -1.57
CLN3-223ENST00000566472 GRPP07492 148 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 ADH4P08319 380 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 P0C879 139 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 WT1P19544 449 aaPredicted RBP5.26□□□□□ -1.57
CLN3-223ENST00000566472 EPHA1P21709 976 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 IL2RGP31785 369 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 PPP1CCP36873 323 aaKnown RBP5.26□□□□□ -1.57
CLN3-223ENST00000566472 CFHR2P36980 270 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 CEACAM6P40199 344 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 OR3A1P47881 315 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 ID4P47928 161 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 HTD2P86397 168 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 RTP5Q14D33 572 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 ATP6V1FQ16864 119 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 DEFB109BQ30KR1 87 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 RNF212Q495C1 297 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 ZNF585BQ52M93 769 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 ZNF506Q5JVG8 444 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 AVPI1Q5T686 147 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 SPSB3Q6PJ21 355 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 WDR82Q6UXN9 313 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 CXorf67Q86X51 503 aaPredicted RBP5.26□□□□□ -1.57
CLN3-223ENST00000566472 CBLN2Q8IUK8 224 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 ZNF295-AS1Q8N0V1 137 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 DRAM1Q8N682 238 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 OR10G4Q8NGN3 311 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 NINJ1Q92982 152 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 STARD4Q96DR4 205 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 COQ2Q96H96 371 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 EIF5A2Q9GZV4 153 aaKnown RBP5.26□□□□□ -1.57
CLN3-223ENST00000566472 MAGT1Q9H0U3 335 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 RAB9BQ9NP90 201 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 KCNJ16Q9NPI9 418 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 PSENENQ9NZ42 101 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 MLXQ9UH92 298 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 WASF3Q9UPY6 502 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 PPP1R3CQ9UQK1 317 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 TIMM9Q9Y5J7 89 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 SLC25A15Q9Y619 301 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 DOCK10Q96BY6 2186 aa5.26□□□□□ -1.57
CLN3-223ENST00000566472 UNC80Q8N2C7 3258 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 RBFOX3A6NFN3 312 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 A6NLC8 198 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 FAM90A9PA6NNJ1 464 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 COLCA2A8K830 154 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 SRRM5B3KS81 715 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 ITGB1BP1O14713 200 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 SPINT2O43291 252 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 PSPNO60542 156 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms