RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 GAL3ST2Q9H3Q3 398 aa25.23■■□□□ 1.63
CTCF-203ENST00000566078 C5orf66Q9H5L9 145 aa25.23■■□□□ 1.63
CTCF-203ENST00000566078 TAS2R3Q9NYW6 316 aa25.23■■□□□ 1.63
CTCF-203ENST00000566078 ABCA12Q86UK0 2595 aa25.23■■□□□ 1.63
CTCF-203ENST00000566078 PRAF2O60831 178 aa25.23■■□□□ 1.63
CTCF-203ENST00000566078 GNB2P62879 340 aa25.23■■□□□ 1.63
CTCF-203ENST00000566078 CADM3Q8N126 398 aa25.23■■□□□ 1.63
CTCF-203ENST00000566078 ADAD2Q8NCV1 583 aaKnown RBP25.23■■□□□ 1.63
CTCF-203ENST00000566078 OR10V1Q8NGI7 309 aa25.23■■□□□ 1.63
CTCF-203ENST00000566078 ZNF714Q96N38 554 aa25.23■■□□□ 1.63
CTCF-203ENST00000566078 C14orf166Q9Y224 244 aaKnown RBP25.23■■□□□ 1.63
CTCF-203ENST00000566078 IGKV1D-13A0A0B4J2D9 117 aa25.22■■□□□ 1.63
CTCF-203ENST00000566078 IGKV1-13P0DP09 117 aa25.22■■□□□ 1.63
CTCF-203ENST00000566078 PPP1CCP36873 323 aaKnown RBP25.22■■□□□ 1.63
CTCF-203ENST00000566078 BCAP31P51572 246 aa25.22■■□□□ 1.63
CTCF-203ENST00000566078 SECTM1Q8WVN6 248 aa25.22■■□□□ 1.63
CTCF-203ENST00000566078 CAPSLQ8WWF8 208 aa25.22■■□□□ 1.63
CTCF-203ENST00000566078 SEC22CQ9BRL7 303 aa25.22■■□□□ 1.63
CTCF-203ENST00000566078 PARP12Q9H0J9 701 aaKnown RBP25.22■■□□□ 1.63
CTCF-203ENST00000566078 A0A0A6YYJ9 748 aa25.21■■□□□ 1.63
CTCF-203ENST00000566078 CCL3L1P16619 93 aa25.21■■□□□ 1.63
CTCF-203ENST00000566078 UCP3P55916 312 aa25.21■■□□□ 1.63
CTCF-203ENST00000566078 GLDNQ6ZMI3 551 aaPredicted RBP25.21■■□□□ 1.63
CTCF-203ENST00000566078 ZFAND1Q8TCF1 268 aa25.21■■□□□ 1.63
CTCF-203ENST00000566078 C10orf105Q8TEF2 133 aa25.21■■□□□ 1.63
CTCF-203ENST00000566078 RTBDNQ9BSG5 229 aaPredicted RBP25.21■■□□□ 1.63
CTCF-203ENST00000566078 JPT1Q9UK76 154 aa25.21■■□□□ 1.63
CTCF-203ENST00000566078 NDUFS8O00217 210 aa25.2■■□□□ 1.62
CTCF-203ENST00000566078 IGHV2-5P01817 119 aa25.2■■□□□ 1.62
CTCF-203ENST00000566078 CBX3Q13185 183 aa25.2■■□□□ 1.62
CTCF-203ENST00000566078 SLC25A42Q86VD7 318 aa25.2■■□□□ 1.62
CTCF-203ENST00000566078 SLC38A6Q8IZM9 456 aa25.2■■□□□ 1.62
CTCF-203ENST00000566078 SSBP3Q9BWW4 388 aaPredicted RBP25.2■■□□□ 1.62
CTCF-203ENST00000566078 TOLLIPQ9H0E2 274 aa25.2■■□□□ 1.62
CTCF-203ENST00000566078 LINC00574Q9H8X3 128 aa25.2■■□□□ 1.62
CTCF-203ENST00000566078 IDI2-AS1Q9NZ38 188 aa25.2■■□□□ 1.62
CTCF-203ENST00000566078 GNG12Q9UBI6 72 aa25.2■■□□□ 1.62
CTCF-203ENST00000566078 APCP25054 2843 aa25.2■■□□□ 1.62
CTCF-203ENST00000566078 C7orf66A4D0T2 115 aa25.19■■□□□ 1.62
CTCF-203ENST00000566078 PHF1O43189 567 aaPredicted RBP25.19■■□□□ 1.62
CTCF-203ENST00000566078 IL5P05113 134 aa25.19■■□□□ 1.62
CTCF-203ENST00000566078 CTSDP07339 412 aaPredicted RBP25.19■■□□□ 1.62
CTCF-203ENST00000566078 AKR1C4P17516 323 aa25.19■■□□□ 1.62
CTCF-203ENST00000566078 TAS2R31P59538 309 aa25.19■■□□□ 1.62
CTCF-203ENST00000566078 C4orf46Q504U0 113 aa25.19■■□□□ 1.62
CTCF-203ENST00000566078 ESCO2Q56NI9 601 aa25.19■■□□□ 1.62
CTCF-203ENST00000566078 PRAMEF5Q5TYX0 476 aa25.19■■□□□ 1.62
CTCF-203ENST00000566078 METTL11BQ5VVY1 283 aa25.19■■□□□ 1.62
CTCF-203ENST00000566078 SLC5A7Q9GZV3 580 aa25.19■■□□□ 1.62
CTCF-203ENST00000566078 ALX4Q9H161 411 aaPredicted RBP25.19■■□□□ 1.62
CTCF-203ENST00000566078 ARHGAP32A7KAX9 2087 aa25.19■■□□□ 1.62
CTCF-203ENST00000566078 POLQO75417 2590 aa25.19■■□□□ 1.62
CTCF-203ENST00000566078 OR4E1P0C645 316 aa25.19■■□□□ 1.62
CTCF-203ENST00000566078 LOXL3P58215 753 aa25.19■■□□□ 1.62
CTCF-203ENST00000566078 LDLRAD3Q86YD5 345 aa25.19■■□□□ 1.62
CTCF-203ENST00000566078 OR52B4Q8NGK2 314 aa25.19■■□□□ 1.62
CTCF-203ENST00000566078 CLDND2Q8NHS1 167 aa25.19■■□□□ 1.62
CTCF-203ENST00000566078 RSRP1Q9BUV0 290 aa25.19■■□□□ 1.62
CTCF-203ENST00000566078 GHITMQ9H3K2 345 aa25.19■■□□□ 1.62
CTCF-203ENST00000566078 RPUSD1Q9UJJ7 312 aaKnown RBP25.19■■□□□ 1.62
CTCF-203ENST00000566078 LUMP51884 338 aaPredicted RBP25.18■■□□□ 1.62
CTCF-203ENST00000566078 TMEM230Q96A57 120 aa25.18■■□□□ 1.62
CTCF-203ENST00000566078 GPN1Q9HCN4 374 aaPredicted RBP25.18■■□□□ 1.62
CTCF-203ENST00000566078 ZNF221Q9UK13 617 aa25.18■■□□□ 1.62
CTCF-203ENST00000566078 RBM7Q9Y580 266 aaKnown RBP25.18■■□□□ 1.62
CTCF-203ENST00000566078 DNASE1P24855 282 aa25.17■■□□□ 1.62
CTCF-203ENST00000566078 ABCA11PQ4W5N1 156 aa25.17■■□□□ 1.62
CTCF-203ENST00000566078 LPCAT3Q6P1A2 487 aa25.17■■□□□ 1.62
CTCF-203ENST00000566078 BEX4Q9NWD9 120 aaPredicted RBP25.17■■□□□ 1.62
CTCF-203ENST00000566078 GFOD1Q9NXC2 390 aa25.17■■□□□ 1.62
CTCF-203ENST00000566078 MMP23AO75900 390 aa25.16■■□□□ 1.62
CTCF-203ENST00000566078 NFYBP25208 207 aa25.16■■□□□ 1.62
CTCF-203ENST00000566078 TMEM30BQ3MIR4 351 aa25.16■■□□□ 1.62
CTCF-203ENST00000566078 C8orf46Q8TAG6 207 aa25.16■■□□□ 1.62
CTCF-203ENST00000566078 OR51J1Q9H342 316 aa25.16■■□□□ 1.62
CTCF-203ENST00000566078 VWC2LB2RUY7 222 aa25.15■■□□□ 1.62
CTCF-203ENST00000566078 DLX6P56179 175 aa25.15■■□□□ 1.62
CTCF-203ENST00000566078 PPP1R1AQ13522 171 aa25.15■■□□□ 1.62
CTCF-203ENST00000566078 MORN2Q502X0 79 aa25.15■■□□□ 1.62
CTCF-203ENST00000566078 PHLDA2Q53GA4 152 aa25.15■■□□□ 1.62
CTCF-203ENST00000566078 CCL28Q9NRJ3 127 aa25.15■■□□□ 1.62
CTCF-203ENST00000566078 PPIAL4CA0A0B4J2A2 164 aa25.15■■□□□ 1.62
CTCF-203ENST00000566078 C22orf46C9J442 243 aa25.15■■□□□ 1.62
CTCF-203ENST00000566078 HSD17B6O14756 317 aa25.15■■□□□ 1.62
CTCF-203ENST00000566078 YPEL1O60688 119 aa25.15■■□□□ 1.62
CTCF-203ENST00000566078 OR8U9P0C7N5 309 aa25.15■■□□□ 1.62
CTCF-203ENST00000566078 PPIAL4GP0DN37 164 aa25.15■■□□□ 1.62
CTCF-203ENST00000566078 GNRHRP30968 328 aa25.15■■□□□ 1.62
CTCF-203ENST00000566078 DSCR9P59020 149 aa25.15■■□□□ 1.62
CTCF-203ENST00000566078 UBE2MP61081 183 aaKnown RBP25.15■■□□□ 1.62
CTCF-203ENST00000566078 FAHD2BQ6P2I3 314 aaPredicted RBP25.15■■□□□ 1.62
CTCF-203ENST00000566078 ZNF818PQ6ZRF7 136 aa25.15■■□□□ 1.62
CTCF-203ENST00000566078 OR10A7Q8NGE5 316 aa25.15■■□□□ 1.62
CTCF-203ENST00000566078 OR8U1Q8NH10 309 aa25.15■■□□□ 1.62
CTCF-203ENST00000566078 FAHD2AQ96GK7 314 aa25.15■■□□□ 1.62
CTCF-203ENST00000566078 ZNF486Q96H40 463 aaPredicted RBP25.15■■□□□ 1.62
CTCF-203ENST00000566078 YPEL2Q96QA6 119 aa25.15■■□□□ 1.62
CTCF-203ENST00000566078 KCNS2Q9ULS6 477 aa25.15■■□□□ 1.62
CTCF-203ENST00000566078 FASNP49327 2511 aaKnown RBP25.15■■□□□ 1.62
CTCF-203ENST00000566078 VPS13CQ709C8 3753 aa25.14■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms