RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 JAGN1Q8N5M9 183 aa13.39□□□□□ -0.27
CLN3-216ENST00000565316 ZFP41Q8N8Y5 198 aa13.39□□□□□ -0.27
CLN3-216ENST00000565316 OR10V1Q8NGI7 309 aa13.39□□□□□ -0.27
CLN3-216ENST00000565316 OR4K15Q8NH41 348 aa13.39□□□□□ -0.27
CLN3-216ENST00000565316 OR14A2Q96R54 314 aa13.39□□□□□ -0.27
CLN3-216ENST00000565316 CHCHD3Q9NX63 227 aaKnown RBP13.39□□□□□ -0.27
CLN3-216ENST00000565316 PEX16Q9Y5Y5 336 aa13.39□□□□□ -0.27
CLN3-216ENST00000565316 FUT3P21217 361 aa13.39□□□□□ -0.27
CLN3-216ENST00000565316 PSMB8P28062 276 aa13.39□□□□□ -0.27
CLN3-216ENST00000565316 MED21Q13503 144 aa13.39□□□□□ -0.27
CLN3-216ENST00000565316 FHL3Q13643 280 aa13.39□□□□□ -0.27
CLN3-216ENST00000565316 TTC23Q5W5X9 447 aa13.39□□□□□ -0.27
CLN3-216ENST00000565316 SIGIRRQ6IA17 410 aa13.39□□□□□ -0.27
CLN3-216ENST00000565316 ZNF554Q86TJ5 538 aa13.39□□□□□ -0.27
CLN3-216ENST00000565316 OR5M8Q8NGP6 311 aa13.39□□□□□ -0.27
CLN3-216ENST00000565316 MYOZ3Q8TDC0 251 aa13.39□□□□□ -0.27
CLN3-216ENST00000565316 TFAP2CQ92754 450 aa13.39□□□□□ -0.27
CLN3-216ENST00000565316 GGHQ92820 318 aa13.39□□□□□ -0.27
CLN3-216ENST00000565316 RBMXL1Q96E39 390 aaKnown RBP13.39□□□□□ -0.27
CLN3-216ENST00000565316 Q96M66 194 aa13.39□□□□□ -0.27
CLN3-216ENST00000565316 WWC2-AS2Q96NR7 200 aa13.39□□□□□ -0.27
CLN3-216ENST00000565316 CHCHD6Q9BRQ6 235 aa13.39□□□□□ -0.27
CLN3-216ENST00000565316 MBNL3Q9NUK0 354 aaKnown RBP13.39□□□□□ -0.27
CLN3-216ENST00000565316 LSM4Q9Y4Z0 139 aaKnown RBP13.39□□□□□ -0.27
CLN3-216ENST00000565316 A0A1W2PPK0 400 aa13.38□□□□□ -0.27
CLN3-216ENST00000565316 BAG2O95816 211 aa13.38□□□□□ -0.27
CLN3-216ENST00000565316 CD1AP06126 327 aa13.38□□□□□ -0.27
CLN3-216ENST00000565316 MGMTP16455 207 aa13.38□□□□□ -0.27
CLN3-216ENST00000565316 LUMP51884 338 aaPredicted RBP13.38□□□□□ -0.27
CLN3-216ENST00000565316 RAB25P57735 213 aa13.38□□□□□ -0.27
CLN3-216ENST00000565316 TAS2R43P59537 309 aa13.38□□□□□ -0.27
CLN3-216ENST00000565316 ADARB1P78563 741 aaKnown RBP13.38□□□□□ -0.27
CLN3-216ENST00000565316 ST3GAL4Q11206 333 aa13.38□□□□□ -0.27
CLN3-216ENST00000565316 LSAMPQ13449 338 aa13.38□□□□□ -0.27
CLN3-216ENST00000565316 MORN2Q502X0 79 aa13.38□□□□□ -0.27
CLN3-216ENST00000565316 AWAT2Q6E213 333 aa13.38□□□□□ -0.27
CLN3-216ENST00000565316 C4orf3Q8WVX3 66 aa13.38□□□□□ -0.27
CLN3-216ENST00000565316 KCTD7Q96MP8 289 aa13.38□□□□□ -0.27
CLN3-216ENST00000565316 DERL3Q96Q80 235 aa13.38□□□□□ -0.27
CLN3-216ENST00000565316 SELENOIQ9C0D9 397 aa13.38□□□□□ -0.27
CLN3-216ENST00000565316 BANF2Q9H503 90 aa13.38□□□□□ -0.27
CLN3-216ENST00000565316 TAF9BQ9HBM6 251 aa13.38□□□□□ -0.27
CLN3-216ENST00000565316 NHLRC4P0CG21 123 aaPredicted RBP13.37□□□□□ -0.27
CLN3-216ENST00000565316 VDAC1P21796 283 aa13.37□□□□□ -0.27
CLN3-216ENST00000565316 DOC2BQ14184 412 aa13.37□□□□□ -0.27
CLN3-216ENST00000565316 C9orf66Q5T8R8 295 aa13.37□□□□□ -0.27
CLN3-216ENST00000565316 PRR18Q8N4B5 295 aa13.37□□□□□ -0.27
CLN3-216ENST00000565316 SETD9Q8NE22 299 aa13.37□□□□□ -0.27
CLN3-216ENST00000565316 CYGBQ8WWM9 190 aa13.37□□□□□ -0.27
CLN3-216ENST00000565316 CYYR1Q96J86 154 aa13.37□□□□□ -0.27
CLN3-216ENST00000565316 UQCC2Q9BRT2 126 aa13.37□□□□□ -0.27
CLN3-216ENST00000565316 OR2S2Q9NQN1 319 aa13.37□□□□□ -0.27
CLN3-216ENST00000565316 SCOCQ9UIL1 159 aa13.37□□□□□ -0.27
CLN3-216ENST00000565316 EFCAB10A6NFE3 127 aa13.36□□□□□ -0.27
CLN3-216ENST00000565316 CRTAPO75718 401 aaPredicted RBP13.36□□□□□ -0.27
CLN3-216ENST00000565316 MAS1P04201 325 aa13.36□□□□□ -0.27
CLN3-216ENST00000565316 OR5H8P0DN80 308 aa13.36□□□□□ -0.27
CLN3-216ENST00000565316 PPIFP30405 207 aaKnown RBP13.36□□□□□ -0.27
CLN3-216ENST00000565316 CAPGP40121 348 aa13.36□□□□□ -0.27
CLN3-216ENST00000565316 HTD2P86397 168 aa13.36□□□□□ -0.27
CLN3-216ENST00000565316 KIAA0141Q14154 515 aaPredicted RBP13.36□□□□□ -0.27
CLN3-216ENST00000565316 LY6G6FQ5SQ64 297 aa13.36□□□□□ -0.27
CLN3-216ENST00000565316 ODF3L1Q8IXM7 274 aa13.36□□□□□ -0.27
CLN3-216ENST00000565316 PACRGLQ8N7B6 248 aa13.36□□□□□ -0.27
CLN3-216ENST00000565316 MRPL30Q8TCC3 161 aaKnown RBP13.36□□□□□ -0.27
CLN3-216ENST00000565316 C8orf4Q9NR00 106 aa13.36□□□□□ -0.27
CLN3-216ENST00000565316 CNOT2Q9NZN8 540 aaKnown RBP13.36□□□□□ -0.27
CLN3-216ENST00000565316 ZNF107Q9UII5 783 aaPredicted RBP13.36□□□□□ -0.27
CLN3-216ENST00000565316 UBE2QL1A1L167 161 aa13.35□□□□□ -0.27
CLN3-216ENST00000565316 PDCD6O75340 191 aa13.35□□□□□ -0.27
CLN3-216ENST00000565316 VSIG8P0DPA2 414 aa13.35□□□□□ -0.27
CLN3-216ENST00000565316 RUNX1Q01196 453 aa13.35□□□□□ -0.27
CLN3-216ENST00000565316 GNMTQ14749 295 aa13.35□□□□□ -0.27
CLN3-216ENST00000565316 MMDQ15546 238 aa13.35□□□□□ -0.27
CLN3-216ENST00000565316 C6orf141Q5SZD1 244 aa13.35□□□□□ -0.27
CLN3-216ENST00000565316 LAIR2Q6ISS4 152 aa13.35□□□□□ -0.27
CLN3-216ENST00000565316 NKAIN3Q8N8D7 197 aa13.35□□□□□ -0.27
CLN3-216ENST00000565316 OR52L2PQ8NGH6 319 aa13.35□□□□□ -0.27
CLN3-216ENST00000565316 RITA1Q96K30 269 aa13.35□□□□□ -0.27
CLN3-216ENST00000565316 ABHD14AQ9BUJ0 271 aa13.35□□□□□ -0.27
CLN3-216ENST00000565316 KCNIP1Q9NZI2 227 aa13.35□□□□□ -0.27
CLN3-216ENST00000565316 GHRLQ9UBU3 117 aa13.35□□□□□ -0.27
CLN3-216ENST00000565316 JPT1Q9UK76 154 aa13.35□□□□□ -0.27
CLN3-216ENST00000565316 PNMA8CA0A1B0GUJ8 204 aa13.34□□□□□ -0.27
CLN3-216ENST00000565316 SEC14L6B5MCN3 397 aa13.34□□□□□ -0.27
CLN3-216ENST00000565316 YPEL1O60688 119 aa13.34□□□□□ -0.27
CLN3-216ENST00000565316 IGLV1-40P01703 118 aa13.34□□□□□ -0.27
CLN3-216ENST00000565316 HLA-DRB1P01911 266 aa13.34□□□□□ -0.27
CLN3-216ENST00000565316 CELP19835 753 aa13.34□□□□□ -0.27
CLN3-216ENST00000565316 PPP1CCP36873 323 aaKnown RBP13.34□□□□□ -0.27
CLN3-216ENST00000565316 ACTBP60709 375 aa13.34□□□□□ -0.27
CLN3-216ENST00000565316 ZNF833PQ6ZTB9 187 aa13.34□□□□□ -0.27
CLN3-216ENST00000565316 C5orf24Q7Z6I8 188 aa13.34□□□□□ -0.27
CLN3-216ENST00000565316 DHRSXQ8N5I4 330 aa13.34□□□□□ -0.27
CLN3-216ENST00000565316 OR11H1Q8NG94 326 aa13.34□□□□□ -0.27
CLN3-216ENST00000565316 THRSPQ92748 146 aa13.34□□□□□ -0.27
CLN3-216ENST00000565316 UBE2E2Q96LR5 201 aa13.34□□□□□ -0.27
CLN3-216ENST00000565316 YPEL2Q96QA6 119 aa13.34□□□□□ -0.27
CLN3-216ENST00000565316 PRR25Q96S07 402 aa13.34□□□□□ -0.27
CLN3-216ENST00000565316 NABP2Q9BQ15 211 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms