RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 KCNG3Q8TAE7 436 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 RTN4IP1Q8WWV3 396 aaPredicted RBP11.42□□□□□ -0.58
CLK3-206ENST00000562078 DDIT4LQ96D03 193 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 SPACA9Q96E40 222 aaPredicted RBP11.42□□□□□ -0.58
CLK3-206ENST00000562078 NUDT11Q96G61 164 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 NAA60Q9H7X0 242 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 CENPMQ9NSP4 180 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 NAT8Q9UHE5 227 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 NPIPA1Q9UND3 350 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 PTRH2Q9Y3E5 179 aaKnown RBP11.42□□□□□ -0.58
CLK3-206ENST00000562078 A0A0U1RQV5 110 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 GRIFINA4D1Z8 144 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 EFNA2O43921 213 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 OPN1LWP04000 364 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 TRIP6Q15654 476 aaKnown RBP11.42□□□□□ -0.58
CLK3-206ENST00000562078 H1FNTQ75WM6 255 aaPredicted RBP11.42□□□□□ -0.58
CLK3-206ENST00000562078 LINC01551Q86U37 167 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 ZNF709Q8N972 641 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 OR4D5Q8NGN0 318 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 CMTM2Q8TAZ6 248 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 ASB10Q8WXI3 467 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 HDHD3Q9BSH5 251 aaPredicted RBP11.42□□□□□ -0.58
CLK3-206ENST00000562078 MANBALQ9NQG1 85 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 MED29Q9NX70 200 aa11.42□□□□□ -0.58
CLK3-206ENST00000562078 COA3Q9Y2R0 106 aaPredicted RBP11.42□□□□□ -0.58
CLK3-206ENST00000562078 TRAV39A0A0B4J263 110 aa11.41□□□□□ -0.58
CLK3-206ENST00000562078 SSSCA1O60232 199 aa11.41□□□□□ -0.58
CLK3-206ENST00000562078 TTRP02766 147 aa11.41□□□□□ -0.58
CLK3-206ENST00000562078 RPL23P62829 140 aaKnown RBP11.41□□□□□ -0.58
CLK3-206ENST00000562078 PRAMEF20Q5VT98 475 aa11.41□□□□□ -0.58
CLK3-206ENST00000562078 ODF3L1Q8IXM7 274 aa11.41□□□□□ -0.58
CLK3-206ENST00000562078 CISD2Q8N5K1 135 aaKnown RBP11.41□□□□□ -0.58
CLK3-206ENST00000562078 TMEM252Q8N6L7 170 aa11.41□□□□□ -0.58
CLK3-206ENST00000562078 OR51T1Q8NGJ9 327 aa11.41□□□□□ -0.58
CLK3-206ENST00000562078 OR5D14Q8NGL3 314 aa11.41□□□□□ -0.58
CLK3-206ENST00000562078 GNPNAT1Q96EK6 184 aaPredicted RBP11.41□□□□□ -0.58
CLK3-206ENST00000562078 HSPB9Q9BQS6 159 aa11.41□□□□□ -0.58
CLK3-206ENST00000562078 VSIRQ9H7M9 311 aa11.41□□□□□ -0.58
CLK3-206ENST00000562078 NXT1Q9UKK6 140 aaKnown RBP11.41□□□□□ -0.58
CLK3-206ENST00000562078 LAMTOR2Q9Y2Q5 125 aa11.41□□□□□ -0.58
CLK3-206ENST00000562078 COX11Q9Y6N1 276 aa11.41□□□□□ -0.58
CLK3-206ENST00000562078 TRAV34A0A0B4J273 112 aa11.41□□□□□ -0.58
CLK3-206ENST00000562078 ZNF320A2RRD8 509 aa11.41□□□□□ -0.58
CLK3-206ENST00000562078 PCNX2A6NKB5 2137 aa11.41□□□□□ -0.58
CLK3-206ENST00000562078 MT-CO3P00414 261 aa11.41□□□□□ -0.58
CLK3-206ENST00000562078 ZNF16P17020 682 aaPredicted RBP11.41□□□□□ -0.58
CLK3-206ENST00000562078 TCN2P20062 427 aa11.41□□□□□ -0.58
CLK3-206ENST00000562078 MRPS34P82930 218 aaKnown RBP11.41□□□□□ -0.58
CLK3-206ENST00000562078 PRDX4Q13162 271 aa11.41□□□□□ -0.58
CLK3-206ENST00000562078 FBLN7Q53RD9 439 aa11.41□□□□□ -0.58
CLK3-206ENST00000562078 LDLRAD2Q5SZI1 272 aa11.41□□□□□ -0.58
CLK3-206ENST00000562078 OR5D18Q8NGL1 313 aa11.41□□□□□ -0.58
CLK3-206ENST00000562078 RPUSD4Q96CM3 377 aaKnown RBP11.41□□□□□ -0.58
CLK3-206ENST00000562078 C11orf1Q9H5F2 150 aa11.41□□□□□ -0.58
CLK3-206ENST00000562078 DOCK10Q96BY6 2186 aa11.4□□□□□ -0.58
CLK3-206ENST00000562078 LOC102724200A0A096LPH7 203 aaPredicted RBP11.4□□□□□ -0.58
CLK3-206ENST00000562078 A0A1W2PNV4 684 aa11.4□□□□□ -0.58
CLK3-206ENST00000562078 LIPT2A6NK58 231 aa11.4□□□□□ -0.58
CLK3-206ENST00000562078 DKK1O94907 266 aa11.4□□□□□ -0.58
CLK3-206ENST00000562078 CDS2O95674 445 aa11.4□□□□□ -0.58
CLK3-206ENST00000562078 HLA-HP01893 362 aa11.4□□□□□ -0.58
CLK3-206ENST00000562078 BLVRBP30043 206 aaPredicted RBP11.4□□□□□ -0.58
CLK3-206ENST00000562078 COMPP49747 757 aaPredicted RBP11.4□□□□□ -0.58
CLK3-206ENST00000562078 DAP3P51398 398 aaKnown RBP11.4□□□□□ -0.58
CLK3-206ENST00000562078 FXYD4P59646 89 aa11.4□□□□□ -0.58
CLK3-206ENST00000562078 MYBPHQ13203 477 aa11.4□□□□□ -0.58
CLK3-206ENST00000562078 ABCA11PQ4W5N1 156 aa11.4□□□□□ -0.58
CLK3-206ENST00000562078 HES3Q5TGS1 186 aa11.4□□□□□ -0.58
CLK3-206ENST00000562078 LIAT1Q6ZQX7 453 aa11.4□□□□□ -0.58
CLK3-206ENST00000562078 DEFB124Q8NES8 71 aa11.4□□□□□ -0.58
CLK3-206ENST00000562078 OR2M3Q8NG83 312 aa11.4□□□□□ -0.58
CLK3-206ENST00000562078 IMMP2LQ96T52 175 aa11.4□□□□□ -0.58
CLK3-206ENST00000562078 OR10A2Q9H208 303 aa11.4□□□□□ -0.58
CLK3-206ENST00000562078 OR51I2Q9H344 312 aa11.4□□□□□ -0.58
CLK3-206ENST00000562078 MCTS1Q9ULC4 181 aaKnown RBP11.4□□□□□ -0.58
CLK3-206ENST00000562078 TRAPPC1Q9Y5R8 145 aa11.4□□□□□ -0.58
CLK3-206ENST00000562078 NCKAP5O14513 1909 aa11.4□□□□□ -0.59
CLK3-206ENST00000562078 CUL9Q8IWT3 2517 aa11.4□□□□□ -0.59
CLK3-206ENST00000562078 LOC102723996A0A087X1L8 192 aa11.4□□□□□ -0.59
CLK3-206ENST00000562078 IGLV3-32A0A0A0MS00 114 aa11.4□□□□□ -0.59
CLK3-206ENST00000562078 IGHV1-45A0A0A0MS14 117 aa11.4□□□□□ -0.59
CLK3-206ENST00000562078 TRAV1-1A0A0B4J248 108 aa11.4□□□□□ -0.59
CLK3-206ENST00000562078 IGHV2-70DA0A0C4DH43 119 aa11.4□□□□□ -0.59
CLK3-206ENST00000562078 KLF7O75840 302 aaPredicted RBP11.4□□□□□ -0.59
CLK3-206ENST00000562078 NXPH3O95157 252 aa11.4□□□□□ -0.59
CLK3-206ENST00000562078 CYC1P08574 325 aa11.4□□□□□ -0.59
CLK3-206ENST00000562078 ZP4Q12836 540 aa11.4□□□□□ -0.59
CLK3-206ENST00000562078 ZNF154Q13106 437 aa11.4□□□□□ -0.59
CLK3-206ENST00000562078 ZNF726P1Q15940 193 aa11.4□□□□□ -0.59
CLK3-206ENST00000562078 FAM180AQ6UWF9 173 aa11.4□□□□□ -0.59
CLK3-206ENST00000562078 MEX3BQ6ZN04 569 aaKnown RBP11.4□□□□□ -0.59
CLK3-206ENST00000562078 CYP2G1PQ6ZSU1 146 aa11.4□□□□□ -0.59
CLK3-206ENST00000562078 TMPRSS7Q7RTY8 843 aa11.4□□□□□ -0.59
CLK3-206ENST00000562078 CENPVQ7Z7K6 275 aaPredicted RBP11.4□□□□□ -0.59
CLK3-206ENST00000562078 H1FOOQ8IZA3 346 aaPredicted RBP11.4□□□□□ -0.59
CLK3-206ENST00000562078 ZNF738Q8NE65 137 aa11.4□□□□□ -0.59
CLK3-206ENST00000562078 APH1AQ96BI3 265 aa11.4□□□□□ -0.59
CLK3-206ENST00000562078 MSI2Q96DH6 328 aaKnown RBP11.4□□□□□ -0.59
CLK3-206ENST00000562078 LIN37Q96GY3 246 aaPredicted RBP11.4□□□□□ -0.59
CLK3-206ENST00000562078 ZNF703Q9H7S9 590 aaPredicted RBP11.4□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms