RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 NKX2-1P43699 371 aaPredicted RBP9.72□□□□□ -0.85
CUX1-218ENST00000560541 RBM11P57052 281 aaKnown RBP9.72□□□□□ -0.85
CUX1-218ENST00000560541 RIPPLY3P57055 190 aa9.72□□□□□ -0.85
CUX1-218ENST00000560541 DAZAP2Q15038 168 aaPredicted RBP9.72□□□□□ -0.85
CUX1-218ENST00000560541 TBC1D26Q86UD7 250 aa9.72□□□□□ -0.85
CUX1-218ENST00000560541 ZNF695Q8IW36 515 aa9.72□□□□□ -0.85
CUX1-218ENST00000560541 OR56B2PQ8NGI1 322 aa9.72□□□□□ -0.85
CUX1-218ENST00000560541 IMMP1LQ96LU5 166 aa9.72□□□□□ -0.85
CUX1-218ENST00000560541 FOXB1Q99853 325 aa9.72□□□□□ -0.85
CUX1-218ENST00000560541 hCG_38984A0A1B0GV85 526 aa9.71□□□□□ -0.85
CUX1-218ENST00000560541 ADAM20O43506 726 aa9.71□□□□□ -0.85
CUX1-218ENST00000560541 KLF7O75840 302 aaPredicted RBP9.71□□□□□ -0.85
CUX1-218ENST00000560541 FGF5P12034 268 aa9.71□□□□□ -0.85
CUX1-218ENST00000560541 SUCLG1P53597 346 aaKnown RBP9.71□□□□□ -0.85
CUX1-218ENST00000560541 SELENOTP62341 195 aa9.71□□□□□ -0.85
CUX1-218ENST00000560541 P4HA3Q7Z4N8 544 aa9.71□□□□□ -0.85
CUX1-218ENST00000560541 WFDC8Q8IUA0 241 aa9.71□□□□□ -0.85
CUX1-218ENST00000560541 SPEM1Q8N4L4 309 aa9.71□□□□□ -0.85
CUX1-218ENST00000560541 CCDC71LQ8N9Z2 235 aa9.71□□□□□ -0.85
CUX1-218ENST00000560541 OR5C1Q8NGR4 320 aa9.71□□□□□ -0.85
CUX1-218ENST00000560541 ABHD3Q8WU67 409 aa9.71□□□□□ -0.85
CUX1-218ENST00000560541 ZNF430Q9H8G1 570 aaPredicted RBP9.71□□□□□ -0.85
CUX1-218ENST00000560541 PITPNC1Q9UKF7 332 aa9.71□□□□□ -0.85
CUX1-218ENST00000560541 OR6C6A6NF89 314 aa9.71□□□□□ -0.86
CUX1-218ENST00000560541 HSD17B6O14756 317 aa9.71□□□□□ -0.86
CUX1-218ENST00000560541 SCTP09683 121 aa9.71□□□□□ -0.86
CUX1-218ENST00000560541 GZMHP20718 246 aa9.71□□□□□ -0.86
CUX1-218ENST00000560541 UCP2P55851 309 aa9.71□□□□□ -0.86
CUX1-218ENST00000560541 RPS18P62269 152 aaKnown RBP9.71□□□□□ -0.86
CUX1-218ENST00000560541 CLEC12BQ2HXU8 276 aa9.71□□□□□ -0.86
CUX1-218ENST00000560541 WIPI1Q5MNZ9 446 aaPredicted RBP9.71□□□□□ -0.86
CUX1-218ENST00000560541 OR8G2PQ6IF36 304 aa9.71□□□□□ -0.86
CUX1-218ENST00000560541 NUFIP2Q7Z417 695 aaKnown RBP9.71□□□□□ -0.86
CUX1-218ENST00000560541 DUSP23Q9BVJ7 150 aa9.71□□□□□ -0.86
CUX1-218ENST00000560541 OR2H1Q9GZK4 316 aa9.71□□□□□ -0.86
CUX1-218ENST00000560541 CSTL1Q9H114 145 aa9.71□□□□□ -0.86
CUX1-218ENST00000560541 CRIM1Q9NZV1 1036 aa9.71□□□□□ -0.86
CUX1-218ENST00000560541 STRAPQ9Y3F4 350 aaKnown RBP9.71□□□□□ -0.86
CUX1-218ENST00000560541 H3BP45 60 aa9.71□□□□□ -0.86
CUX1-218ENST00000560541 H3BQ15 152 aa9.71□□□□□ -0.86
CUX1-218ENST00000560541 FUT3P21217 361 aa9.71□□□□□ -0.86
CUX1-218ENST00000560541 CXCL12P48061 93 aa9.71□□□□□ -0.86
CUX1-218ENST00000560541 FUT6P51993 359 aa9.71□□□□□ -0.86
CUX1-218ENST00000560541 KLF3P57682 345 aaPredicted RBP9.71□□□□□ -0.86
CUX1-218ENST00000560541 RAC3P60763 192 aa9.71□□□□□ -0.86
CUX1-218ENST00000560541 VAMP2P63027 116 aa9.71□□□□□ -0.86
CUX1-218ENST00000560541 COL5A1-AS1Q5SY13 56 aa9.71□□□□□ -0.86
CUX1-218ENST00000560541 ZNF818PQ6ZRF7 136 aa9.71□□□□□ -0.86
CUX1-218ENST00000560541 GAPTQ8N292 157 aa9.71□□□□□ -0.86
CUX1-218ENST00000560541 MRGPRDQ8TDS7 321 aa9.71□□□□□ -0.86
CUX1-218ENST00000560541 SAP25Q8TEE9 199 aa9.71□□□□□ -0.86
CUX1-218ENST00000560541 LIPGQ9Y5X9 500 aa9.71□□□□□ -0.86
CUX1-218ENST00000560541 NCKAP5O14513 1909 aa9.71□□□□□ -0.86
CUX1-218ENST00000560541 IGKV1D-13A0A0B4J2D9 117 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 TK1P04183 234 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 IGKV1-13P0DP09 117 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 BCL3P20749 454 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 HLA-BQ31612 363 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 TMEM42Q69YG0 159 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 TMEM183AQ8IXX5 376 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 TMEM222Q9H0R3 208 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 DIDO1Q9BTC0 2240 aaKnown RBP9.7□□□□□ -0.86
CUX1-218ENST00000560541 KIAA1549Q9HCM3 1950 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 LOC102723996A0A087X1L8 192 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 A0A096LPE4 126 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 A0A1W2PPZ6 126 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 XKRY2A2RUG3 117 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 ZNF716A6NP11 495 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 TRDCB7Z8K6 153 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 PROB1E7EW31 1015 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 K7ESF4 209 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 TMEM50AO95807 157 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 JMJD7P0C870 316 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 MAS1LP35410 378 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 DYNLT3P51808 116 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 DLK1P80370 383 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 IQCJQ1A5X6 159 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 TDRG1Q3Y452 100 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 C1orf194Q5T5A4 169 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 ASCL4Q6XD76 172 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 GGNQ86UU5 652 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 OR10D3Q8NH80 312 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 SDSLQ96GA7 329 aa9.7□□□□□ -0.86
CUX1-218ENST00000560541 UBE2ZQ9H832 354 aaPredicted RBP9.7□□□□□ -0.86
CUX1-218ENST00000560541 GCGP01275 180 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 TUBG1P23258 451 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 B3GALT5-AS1P59052 145 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 RND3P61587 244 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 IZUMO4Q1ZYL8 232 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 LYSMD4Q5XG99 296 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 TMEM252Q8N6L7 170 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 OR4C5Q8NGB2 326 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 OR1P1Q8NH06 330 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 TNFRSF14Q92956 283 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 SF3B5Q9BWJ5 86 aaKnown RBP9.69□□□□□ -0.86
CUX1-218ENST00000560541 IL19Q9UHD0 177 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 DNAJC13O75165 2243 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 LOC105371242A0A075B767 164 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 ZNF816-ZNF321PA0A0X1KG74 233 aa9.69□□□□□ -0.86
CUX1-218ENST00000560541 RBFOX3A6NFN3 312 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms