RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 S100GP29377 79 aa9.72□□□□□ -0.85
LDLR-212ENST00000560467 HERV-K104P61576 105 aa9.72□□□□□ -0.85
LDLR-212ENST00000560467 GNB2P62879 340 aa9.72□□□□□ -0.85
LDLR-212ENST00000560467 RPL31P62899 125 aaKnown RBP9.72□□□□□ -0.85
LDLR-212ENST00000560467 SCGB2B2Q4G0G5 96 aa9.72□□□□□ -0.85
LDLR-212ENST00000560467 ESCO2Q56NI9 601 aa9.72□□□□□ -0.85
LDLR-212ENST00000560467 VAX1Q5SQQ9 334 aa9.72□□□□□ -0.85
LDLR-212ENST00000560467 DCAF12L2Q5VW00 463 aa9.72□□□□□ -0.85
LDLR-212ENST00000560467 RSBN1Q5VWQ0 802 aaPredicted RBP9.72□□□□□ -0.85
LDLR-212ENST00000560467 OR52W1Q6IF63 320 aa9.72□□□□□ -0.85
LDLR-212ENST00000560467 C11orf88Q6PI97 169 aa9.72□□□□□ -0.85
LDLR-212ENST00000560467 PRR18Q8N4B5 295 aa9.72□□□□□ -0.85
LDLR-212ENST00000560467 NANPQ8TBE9 248 aa9.72□□□□□ -0.85
LDLR-212ENST00000560467 MRPL30Q8TCC3 161 aaKnown RBP9.72□□□□□ -0.85
LDLR-212ENST00000560467 IL1F10Q8WWZ1 152 aa9.72□□□□□ -0.85
LDLR-212ENST00000560467 DUX5Q96PT3 197 aa9.72□□□□□ -0.85
LDLR-212ENST00000560467 SLC25A21Q9BQT8 299 aaPredicted RBP9.72□□□□□ -0.85
LDLR-212ENST00000560467 HDHD3Q9BSH5 251 aaPredicted RBP9.72□□□□□ -0.85
LDLR-212ENST00000560467 ZNF747Q9BV97 191 aa9.72□□□□□ -0.85
LDLR-212ENST00000560467 M0QYG6 137 aa9.71□□□□□ -0.86
LDLR-212ENST00000560467 RGS11O94810 467 aa9.71□□□□□ -0.86
LDLR-212ENST00000560467 CD74P04233 296 aa9.71□□□□□ -0.86
LDLR-212ENST00000560467 ZBTB25P24278 435 aa9.71□□□□□ -0.86
LDLR-212ENST00000560467 GLIPR1P48060 266 aa9.71□□□□□ -0.86
LDLR-212ENST00000560467 HLA-DRB3P79483 266 aa9.71□□□□□ -0.86
LDLR-212ENST00000560467 TMEM30BQ3MIR4 351 aa9.71□□□□□ -0.86
LDLR-212ENST00000560467 PDLIM3Q53GG5 364 aaPredicted RBP9.71□□□□□ -0.86
LDLR-212ENST00000560467 LPCAT3Q6P1A2 487 aa9.71□□□□□ -0.86
LDLR-212ENST00000560467 SHISA2Q6UWI4 295 aa9.71□□□□□ -0.86
LDLR-212ENST00000560467 IDO2Q6ZQW0 420 aa9.71□□□□□ -0.86
LDLR-212ENST00000560467 GAPTQ8N292 157 aa9.71□□□□□ -0.86
LDLR-212ENST00000560467 OR4C16Q8NGL9 310 aa9.71□□□□□ -0.86
LDLR-212ENST00000560467 PLPPR1Q8TBJ4 325 aa9.71□□□□□ -0.86
LDLR-212ENST00000560467 MAFIPQ8WZ33 124 aa9.71□□□□□ -0.86
LDLR-212ENST00000560467 ARL11Q969Q4 196 aa9.71□□□□□ -0.86
LDLR-212ENST00000560467 KIRREL1Q96J84 757 aa9.71□□□□□ -0.86
LDLR-212ENST00000560467 C11orf54Q9H0W9 315 aaPredicted RBP9.71□□□□□ -0.86
LDLR-212ENST00000560467 C7orf69Q9H7B7 122 aa9.71□□□□□ -0.86
LDLR-212ENST00000560467 TAF9BQ9HBM6 251 aa9.71□□□□□ -0.86
LDLR-212ENST00000560467 SLC23A1Q9UHI7 598 aa9.71□□□□□ -0.86
LDLR-212ENST00000560467 ANAPC10Q9UM13 185 aa9.71□□□□□ -0.86
LDLR-212ENST00000560467 UBE2J1Q9Y385 318 aaPredicted RBP9.71□□□□□ -0.86
LDLR-212ENST00000560467 RBM7Q9Y580 266 aaKnown RBP9.71□□□□□ -0.86
LDLR-212ENST00000560467 WNK2Q9Y3S1 2297 aa9.71□□□□□ -0.86
LDLR-212ENST00000560467 FAM172BPA6NC97 362 aa9.7□□□□□ -0.86
LDLR-212ENST00000560467 ZNF729A6NN14 1252 aaPredicted RBP9.7□□□□□ -0.86
LDLR-212ENST00000560467 BET1O15155 118 aa9.7□□□□□ -0.86
LDLR-212ENST00000560467 PLA2G10O15496 165 aa9.7□□□□□ -0.86
LDLR-212ENST00000560467 DHFRP00374 187 aa9.7□□□□□ -0.86
LDLR-212ENST00000560467 TFF1P04155 84 aa9.7□□□□□ -0.86
LDLR-212ENST00000560467 GSTT2P0CG29 244 aa9.7□□□□□ -0.86
LDLR-212ENST00000560467 HKR1P10072 659 aa9.7□□□□□ -0.86
LDLR-212ENST00000560467 RCC1P18754 421 aaPredicted RBP9.7□□□□□ -0.86
LDLR-212ENST00000560467 RFX2P48378 723 aa9.7□□□□□ -0.86
LDLR-212ENST00000560467 LCN2P80188 198 aa9.7□□□□□ -0.86
LDLR-212ENST00000560467 HOXA4Q00056 320 aaPredicted RBP9.7□□□□□ -0.86
LDLR-212ENST00000560467 DEFA6Q01524 100 aa9.7□□□□□ -0.86
LDLR-212ENST00000560467 IFITM3Q01628 133 aa9.7□□□□□ -0.86
LDLR-212ENST00000560467 RBMS2Q15434 407 aaKnown RBP9.7□□□□□ -0.86
LDLR-212ENST00000560467 RTN4RL2Q86UN3 420 aa9.7□□□□□ -0.86
LDLR-212ENST00000560467 FAM185AQ8N0U4 392 aa9.7□□□□□ -0.86
LDLR-212ENST00000560467 SIGLECL1Q8N7X8 197 aa9.7□□□□□ -0.86
LDLR-212ENST00000560467 OR51S1Q8NGJ8 323 aa9.7□□□□□ -0.86
LDLR-212ENST00000560467 TERB2Q8NHR7 220 aa9.7□□□□□ -0.86
LDLR-212ENST00000560467 MRGPRDQ8TDS7 321 aa9.7□□□□□ -0.86
LDLR-212ENST00000560467 SNAPC3Q92966 411 aa9.7□□□□□ -0.86
LDLR-212ENST00000560467 PATZ1Q9HBE1 687 aaKnown RBP9.7□□□□□ -0.86
LDLR-212ENST00000560467 MBNL3Q9NUK0 354 aaKnown RBP9.7□□□□□ -0.86
LDLR-212ENST00000560467 TAS2R3Q9NYW6 316 aa9.7□□□□□ -0.86
LDLR-212ENST00000560467 GNG12Q9UBI6 72 aa9.7□□□□□ -0.86
LDLR-212ENST00000560467 TBC1D24Q9ULP9 559 aa9.7□□□□□ -0.86
LDLR-212ENST00000560467 NUBP2Q9Y5Y2 271 aa9.7□□□□□ -0.86
LDLR-212ENST00000560467 LINC00312Q9Y6C7 94 aa9.7□□□□□ -0.86
LDLR-212ENST00000560467 DNAJC9-AS1A6NH13 148 aa9.69□□□□□ -0.86
LDLR-212ENST00000560467 SDCBPO00560 298 aaPredicted RBP9.69□□□□□ -0.86
LDLR-212ENST00000560467 TNFRSF13BO14836 293 aaPredicted RBP9.69□□□□□ -0.86
LDLR-212ENST00000560467 RLN1P04808 185 aa9.69□□□□□ -0.86
LDLR-212ENST00000560467 WNT2P09544 360 aa9.69□□□□□ -0.86
LDLR-212ENST00000560467 ZFP36P26651 326 aaKnown RBP9.69□□□□□ -0.86
LDLR-212ENST00000560467 SLC6A1P30531 599 aa9.69□□□□□ -0.86
LDLR-212ENST00000560467 FCGR2CP31995 323 aa9.69□□□□□ -0.86
LDLR-212ENST00000560467 FOXL1Q12952 345 aa9.69□□□□□ -0.86
LDLR-212ENST00000560467 ZNF880Q6PDB4 577 aa9.69□□□□□ -0.86
LDLR-212ENST00000560467 LYPD2Q6UXB3 125 aa9.69□□□□□ -0.86
LDLR-212ENST00000560467 OVCH2Q7RTZ1 564 aa9.69□□□□□ -0.86
LDLR-212ENST00000560467 NRARPQ7Z6K4 114 aa9.69□□□□□ -0.86
LDLR-212ENST00000560467 OR10A7Q8NGE5 316 aa9.69□□□□□ -0.86
LDLR-212ENST00000560467 OR56B4Q8NH76 319 aa9.69□□□□□ -0.86
LDLR-212ENST00000560467 ZFAND1Q8TCF1 268 aa9.69□□□□□ -0.86
LDLR-212ENST00000560467 CHPT1Q8WUD6 406 aa9.69□□□□□ -0.86
LDLR-212ENST00000560467 GIMAP1Q8WWP7 306 aa9.69□□□□□ -0.86
LDLR-212ENST00000560467 TAF15Q92804 592 aaKnown RBP eCLIP9.69□□□□□ -0.86
LDLR-212ENST00000560467 CORO2AQ92828 525 aa9.69□□□□□ -0.86
LDLR-212ENST00000560467 CREB3L1Q96BA8 519 aa9.69□□□□□ -0.86
LDLR-212ENST00000560467 COQ2Q96H96 371 aa9.69□□□□□ -0.86
LDLR-212ENST00000560467 ZNF2Q9BSG1 426 aaPredicted RBP9.69□□□□□ -0.86
LDLR-212ENST00000560467 SSBP3Q9BWW4 388 aaPredicted RBP9.69□□□□□ -0.86
LDLR-212ENST00000560467 TINAGL1Q9GZM7 467 aaPredicted RBP9.69□□□□□ -0.86
LDLR-212ENST00000560467 OR2S2Q9NQN1 319 aa9.69□□□□□ -0.86
LDLR-212ENST00000560467 ZNF69Q9UC07 566 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms