RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 RTN4RL2Q86UN3 420 aa7.58□□□□□ -1.2
LDLR-211ENST00000560173 DYNAPQ8N1N2 210 aa7.58□□□□□ -1.2
LDLR-211ENST00000560173 ABHD12Q8N2K0 398 aa7.58□□□□□ -1.2
LDLR-211ENST00000560173 Q8N402 240 aa7.58□□□□□ -1.2
LDLR-211ENST00000560173 OR10A7Q8NGE5 316 aa7.58□□□□□ -1.2
LDLR-211ENST00000560173 OR51D1Q8NGF3 324 aa7.58□□□□□ -1.2
LDLR-211ENST00000560173 OR4P4Q8NGL7 312 aa7.58□□□□□ -1.2
LDLR-211ENST00000560173 OR5R1Q8NH85 324 aa7.58□□□□□ -1.2
LDLR-211ENST00000560173 RFESDQ8TAC1 157 aa7.58□□□□□ -1.2
LDLR-211ENST00000560173 CCDC107Q8WV48 283 aa7.58□□□□□ -1.2
LDLR-211ENST00000560173 DEDD2Q8WXF8 326 aa7.58□□□□□ -1.2
LDLR-211ENST00000560173 DYRK2Q92630 601 aa7.58□□□□□ -1.2
LDLR-211ENST00000560173 PTX4Q96A99 478 aa7.58□□□□□ -1.2
LDLR-211ENST00000560173 PHF21AQ96BD5 680 aa7.58□□□□□ -1.2
LDLR-211ENST00000560173 NEDD4LQ96PU5 975 aa7.58□□□□□ -1.2
LDLR-211ENST00000560173 SULT4A1Q9BR01 284 aa7.58□□□□□ -1.2
LDLR-211ENST00000560173 ABCG5Q9H222 651 aa7.58□□□□□ -1.2
LDLR-211ENST00000560173 DPAGT1Q9H3H5 408 aa7.58□□□□□ -1.2
LDLR-211ENST00000560173 IDI2-AS1Q9NZ38 188 aa7.58□□□□□ -1.2
LDLR-211ENST00000560173 VPREB3Q9UKI3 123 aa7.58□□□□□ -1.2
LDLR-211ENST00000560173 MINOS1-NBL1R4GNA1 71 aa7.58□□□□□ -1.2
LDLR-211ENST00000560173 A0A0A6YYH2 397 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 TMEM272A0A1B0GTI8 110 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 BTBD17A6NE02 478 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 FAM181BA6NEQ2 426 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 A6NJ64 397 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 CENPXA8MT69 81 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 FOXI3A8MTJ6 420 aaPredicted RBP7.57□□□□□ -1.2
LDLR-211ENST00000560173 C12orf77C9JDV5 145 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 H3BUX3 64 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 ORC5O43913 435 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 PFDN1O60925 122 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 IGLV1-47P01700 117 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 GZMHP20718 246 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 NFYBP25208 207 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 BLVRBP30043 206 aaPredicted RBP7.57□□□□□ -1.2
LDLR-211ENST00000560173 MNDAP41218 407 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 AP3S2P59780 193 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 PLA2G7Q13093 441 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 ZNF79Q15937 498 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 LRRC75BQ2VPJ9 315 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 C2orf76Q3KRA6 126 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 C6orf201Q7Z4U5 140 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 FAM89BQ8N5H3 189 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 OR4K15Q8NH41 348 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 MRPL30Q8TCC3 161 aaKnown RBP7.57□□□□□ -1.2
LDLR-211ENST00000560173 GCDHQ92947 438 aaPredicted RBP7.57□□□□□ -1.2
LDLR-211ENST00000560173 ARL11Q969Q4 196 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 MALSU1Q96EH3 234 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 SSX3Q99909 188 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 C7orf50Q9BRJ6 194 aaKnown RBP7.57□□□□□ -1.2
LDLR-211ENST00000560173 URM1Q9BTM9 101 aaKnown RBP7.57□□□□□ -1.2
LDLR-211ENST00000560173 LIN7BQ9HAP6 207 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 DIABLOQ9NR28 239 aa7.57□□□□□ -1.2
LDLR-211ENST00000560173 A0A0B4J203 849 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 F2RL2O00254 374 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 SOCS1O15524 211 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 KCNAB3O43448 404 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 GSTZ1O43708 216 aaPredicted RBP7.56□□□□□ -1.2
LDLR-211ENST00000560173 EIF4EP06730 217 aaKnown RBP7.56□□□□□ -1.2
LDLR-211ENST00000560173 GSTT2BP0CG30 244 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 SNRPBP14678 240 aaKnown RBP7.56□□□□□ -1.2
LDLR-211ENST00000560173 RCC1P18754 421 aaPredicted RBP7.56□□□□□ -1.2
LDLR-211ENST00000560173 HTR1DP28221 377 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 EFNB2P52799 333 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 RPL15P61313 204 aaKnown RBP7.56□□□□□ -1.2
LDLR-211ENST00000560173 RELBQ01201 579 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 IFITM3Q01628 133 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 SSX2Q16385 188 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 LTC4SQ16873 150 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 HLA-DRB5Q30154 266 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 C6orf183Q5T699 404 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 TRAT1Q6PIZ9 186 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 OR9G1Q8NH87 305 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 UBALD1Q8TB05 177 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 ZNF596Q8TC21 504 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 LGALS14Q8TCE9 139 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 PIFOQ8TCI5 191 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 TAF15Q92804 592 aaKnown RBP eCLIP7.56□□□□□ -1.2
LDLR-211ENST00000560173 LEAP2Q969E1 77 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 SDHCQ99643 169 aaPredicted RBP7.56□□□□□ -1.2
LDLR-211ENST00000560173 FAAP24Q9BTP7 215 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 MBNL3Q9NUK0 354 aaKnown RBP7.56□□□□□ -1.2
LDLR-211ENST00000560173 C1RLQ9NZP8 487 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 DPM3Q9P2X0 92 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 RAB22AQ9UL26 194 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 TRAPPC2LQ9UL33 140 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 HSF4Q9ULV5 492 aa7.56□□□□□ -1.2
LDLR-211ENST00000560173 TGP01266 2768 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 METTL21EPA6NDL7 271 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 LEUTXA8MZ59 168 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 LY6LH3BQJ8 138 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 BUB1B-PAK6H3BSN5 160 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 J3QR06 171 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 TOR1AO14656 332 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 SPINT2O43291 252 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 NDUFA7O95182 113 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 NAPSAO96009 420 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 IGHV3-7P01780 117 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 HBZP02008 142 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 118.2 ms