RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 RNF7Q9UBF6 113 aa14.12□□□□□ -0.15
LDLR-206ENST00000557958 SESN1Q9Y6P5 492 aa14.12□□□□□ -0.15
LDLR-206ENST00000557958 TMEM56-RWDD3S4R434 201 aa14.12□□□□□ -0.15
LDLR-206ENST00000557958 H0Y980 276 aa14.12□□□□□ -0.15
LDLR-206ENST00000557958 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP14.12□□□□□ -0.15
LDLR-206ENST00000557958 NMBP08949 121 aa14.12□□□□□ -0.15
LDLR-206ENST00000557958 IRF2P14316 349 aa14.12□□□□□ -0.15
LDLR-206ENST00000557958 TNFRSF1AP19438 455 aa14.12□□□□□ -0.15
LDLR-206ENST00000557958 AESQ08117 197 aa14.12□□□□□ -0.15
LDLR-206ENST00000557958 TMEM268Q5VZI3 342 aa14.12□□□□□ -0.15
LDLR-206ENST00000557958 GCSAMQ8N6F7 178 aa14.12□□□□□ -0.15
LDLR-206ENST00000557958 BOLLQ8N9W6 283 aaKnown RBP14.12□□□□□ -0.15
LDLR-206ENST00000557958 IL22RA2Q969J5 263 aa14.12□□□□□ -0.15
LDLR-206ENST00000557958 SNX22Q96L94 193 aa14.12□□□□□ -0.15
LDLR-206ENST00000557958 LURAP1Q96LR2 239 aa14.12□□□□□ -0.15
LDLR-206ENST00000557958 SDHAF2Q9NX18 166 aa14.12□□□□□ -0.15
LDLR-206ENST00000557958 OR1A1Q9P1Q5 309 aa14.12□□□□□ -0.15
LDLR-206ENST00000557958 RALYQ9UKM9 306 aaKnown RBP14.12□□□□□ -0.15
LDLR-206ENST00000557958 TRAV39A0A0B4J263 110 aa14.11□□□□□ -0.15
LDLR-206ENST00000557958 CDS2O95674 445 aa14.11□□□□□ -0.15
LDLR-206ENST00000557958 LHBP01229 141 aa14.11□□□□□ -0.15
LDLR-206ENST00000557958 HEXAP06865 529 aa14.11□□□□□ -0.15
LDLR-206ENST00000557958 ADH4P08319 380 aa14.11□□□□□ -0.15
LDLR-206ENST00000557958 OR4A8P0C604 315 aa14.11□□□□□ -0.15
LDLR-206ENST00000557958 EGR1P18146 543 aa14.11□□□□□ -0.15
LDLR-206ENST00000557958 CEACAM6P40199 344 aa14.11□□□□□ -0.15
LDLR-206ENST00000557958 FBXL19-AS1Q494R0 122 aa14.11□□□□□ -0.15
LDLR-206ENST00000557958 LYZL2Q7Z4W2 148 aa14.11□□□□□ -0.15
LDLR-206ENST00000557958 C5orf24Q7Z6I8 188 aa14.11□□□□□ -0.15
LDLR-206ENST00000557958 CD177Q8N6Q3 437 aa14.11□□□□□ -0.15
LDLR-206ENST00000557958 Q8TCH9 128 aa14.11□□□□□ -0.15
LDLR-206ENST00000557958 COQ2Q96H96 371 aa14.11□□□□□ -0.15
LDLR-206ENST00000557958 IGSF10Q6WRI0 2623 aa14.11□□□□□ -0.15
LDLR-206ENST00000557958 MGST3O14880 152 aa14.1□□□□□ -0.15
LDLR-206ENST00000557958 SPINT2O43291 252 aa14.1□□□□□ -0.15
LDLR-206ENST00000557958 PGLYRP1O75594 196 aaPredicted RBP14.1□□□□□ -0.15
LDLR-206ENST00000557958 SCO1O75880 301 aa14.1□□□□□ -0.15
LDLR-206ENST00000557958 WNT2P09544 360 aa14.1□□□□□ -0.15
LDLR-206ENST00000557958 F2RP25116 425 aa14.1□□□□□ -0.15
LDLR-206ENST00000557958 UCP1P25874 307 aa14.1□□□□□ -0.15
LDLR-206ENST00000557958 ADIPOQQ15848 244 aa14.1□□□□□ -0.15
LDLR-206ENST00000557958 SLC35G3Q8N808 338 aa14.1□□□□□ -0.15
LDLR-206ENST00000557958 OR5D13Q8NGL4 314 aa14.1□□□□□ -0.15
LDLR-206ENST00000557958 AQP10Q96PS8 301 aa14.1□□□□□ -0.15
LDLR-206ENST00000557958 ZNF471Q9BX82 626 aaPredicted RBP14.1□□□□□ -0.15
LDLR-206ENST00000557958 GCM1Q9NP62 436 aa14.1□□□□□ -0.15
LDLR-206ENST00000557958 KCNS2Q9ULS6 477 aa14.1□□□□□ -0.15
LDLR-206ENST00000557958 IGKV1D-17A0A075B6S4 117 aa14.1□□□□□ -0.15
LDLR-206ENST00000557958 RNF212BA8MTL3 300 aa14.1□□□□□ -0.15
LDLR-206ENST00000557958 KRBOX1C9JBD0 128 aa14.1□□□□□ -0.15
LDLR-206ENST00000557958 C12orf77C9JDV5 145 aa14.1□□□□□ -0.15
LDLR-206ENST00000557958 F5H0A9 414 aaPredicted RBP14.1□□□□□ -0.15
LDLR-206ENST00000557958 H0YIZ8 118 aa14.1□□□□□ -0.15
LDLR-206ENST00000557958 SPDEFO95238 335 aa14.1□□□□□ -0.15
LDLR-206ENST00000557958 CLDN14O95500 239 aa14.1□□□□□ -0.15
LDLR-206ENST00000557958 TESK1Q15569 626 aa14.1□□□□□ -0.15
LDLR-206ENST00000557958 ADAM5Q6NVV9 412 aa14.1□□□□□ -0.15
LDLR-206ENST00000557958 ITLN2Q8WWU7 325 aaPredicted RBP14.1□□□□□ -0.15
LDLR-206ENST00000557958 PHYHIPLQ96FC7 376 aa14.1□□□□□ -0.15
LDLR-206ENST00000557958 PLPPR2Q96GM1 343 aa14.1□□□□□ -0.15
LDLR-206ENST00000557958 RAB9BQ9NP90 201 aa14.1□□□□□ -0.15
LDLR-206ENST00000557958 LRRC30A6NM36 301 aa14.09□□□□□ -0.15
LDLR-206ENST00000557958 ZNF737O75373 536 aa14.09□□□□□ -0.15
LDLR-206ENST00000557958 DEDDO75618 318 aa14.09□□□□□ -0.15
LDLR-206ENST00000557958 C1QL1O75973 258 aa14.09□□□□□ -0.15
LDLR-206ENST00000557958 HBZP02008 142 aa14.09□□□□□ -0.15
LDLR-206ENST00000557958 SERPINE2P07093 398 aa14.09□□□□□ -0.15
LDLR-206ENST00000557958 CD55P08174 381 aa14.09□□□□□ -0.15
LDLR-206ENST00000557958 ZBTB34Q8NCN2 500 aa14.09□□□□□ -0.15
LDLR-206ENST00000557958 ST8SIA2Q92186 375 aa14.09□□□□□ -0.15
LDLR-206ENST00000557958 EGLN1Q9GZT9 426 aa14.09□□□□□ -0.15
LDLR-206ENST00000557958 SHARPINQ9H0F6 387 aa14.09□□□□□ -0.15
LDLR-206ENST00000557958 LIN7CQ9NUP9 197 aaKnown RBP14.09□□□□□ -0.15
LDLR-206ENST00000557958 OR5AC2Q9NZP5 309 aa14.09□□□□□ -0.15
LDLR-206ENST00000557958 PFDN2Q9UHV9 154 aa14.09□□□□□ -0.15
LDLR-206ENST00000557958 PPP1R3CQ9UQK1 317 aa14.09□□□□□ -0.15
LDLR-206ENST00000557958 A0A1B0GW55 424 aa14.08□□□□□ -0.16
LDLR-206ENST00000557958 A8MXK9 166 aa14.08□□□□□ -0.16
LDLR-206ENST00000557958 SCGB1D2O95969 90 aa14.08□□□□□ -0.16
LDLR-206ENST00000557958 DUX4L2P0CJ85 424 aa14.08□□□□□ -0.16
LDLR-206ENST00000557958 DUX4L3P0CJ86 424 aa14.08□□□□□ -0.16
LDLR-206ENST00000557958 DUX4L4P0CJ87 422 aa14.08□□□□□ -0.16
LDLR-206ENST00000557958 DUX4L5P0CJ88 424 aa14.08□□□□□ -0.16
LDLR-206ENST00000557958 DUX4L6P0CJ89 424 aa14.08□□□□□ -0.16
LDLR-206ENST00000557958 DUX4L7P0CJ90 424 aa14.08□□□□□ -0.16
LDLR-206ENST00000557958 GZMHP20718 246 aa14.08□□□□□ -0.16
LDLR-206ENST00000557958 GLIPR1P48060 266 aa14.08□□□□□ -0.16
LDLR-206ENST00000557958 ALKAL2Q6UX46 152 aa14.08□□□□□ -0.16
LDLR-206ENST00000557958 HSD17B13Q7Z5P4 300 aaPredicted RBP14.08□□□□□ -0.16
LDLR-206ENST00000557958 FOXRED2Q8IWF2 684 aa14.08□□□□□ -0.16
LDLR-206ENST00000557958 ZNF561Q8N587 486 aa14.08□□□□□ -0.16
LDLR-206ENST00000557958 EIF4E3Q8N5X7 224 aaKnown RBP14.08□□□□□ -0.16
LDLR-206ENST00000557958 OR1S1Q8NH92 325 aa14.08□□□□□ -0.16
LDLR-206ENST00000557958 MRGPRDQ8TDS7 321 aa14.08□□□□□ -0.16
LDLR-206ENST00000557958 FAM222BQ8WU58 562 aa14.08□□□□□ -0.16
LDLR-206ENST00000557958 FAM216AQ8WUB2 273 aa14.08□□□□□ -0.16
LDLR-206ENST00000557958 TOLLIPQ9H0E2 274 aa14.08□□□□□ -0.16
LDLR-206ENST00000557958 ZC4H2Q9NQZ6 224 aa14.08□□□□□ -0.16
LDLR-206ENST00000557958 DUX4Q9UBX2 424 aa14.08□□□□□ -0.16
LDLR-206ENST00000557958 METRNQ9UJH8 293 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms