RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 ZNF295-AS1Q8N0V1 137 aa13.89□□□□□ -0.19
SHMT2-232ENST00000557487 CPEB3Q8NE35 698 aaKnown RBP13.89□□□□□ -0.19
SHMT2-232ENST00000557487 OR10A7Q8NGE5 316 aa13.89□□□□□ -0.19
SHMT2-232ENST00000557487 PSMF1Q92530 271 aa13.89□□□□□ -0.19
SHMT2-232ENST00000557487 PYGO2Q9BRQ0 406 aa13.89□□□□□ -0.19
SHMT2-232ENST00000557487 ARRDC1-AS1Q9H2J1 176 aa13.89□□□□□ -0.19
SHMT2-232ENST00000557487 PSENENQ9NZ42 101 aa13.89□□□□□ -0.19
SHMT2-232ENST00000557487 MTCH1Q9NZJ7 389 aa13.89□□□□□ -0.19
SHMT2-232ENST00000557487 ASCC3Q8N3C0 2202 aaKnown RBP13.88□□□□□ -0.19
SHMT2-232ENST00000557487 APLNRP35414 380 aa13.88□□□□□ -0.19
SHMT2-232ENST00000557487 GPM6AP51674 278 aa13.88□□□□□ -0.19
SHMT2-232ENST00000557487 ZFP36L1Q07352 338 aaKnown RBP13.88□□□□□ -0.19
SHMT2-232ENST00000557487 TMEM183AQ8IXX5 376 aa13.88□□□□□ -0.19
SHMT2-232ENST00000557487 OR10V1Q8NGI7 309 aa13.88□□□□□ -0.19
SHMT2-232ENST00000557487 PACRGQ96M98 296 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-232ENST00000557487 ZNF665Q9H7R5 613 aa13.88□□□□□ -0.19
SHMT2-232ENST00000557487 OR14J1Q9UGF5 321 aa13.88□□□□□ -0.19
SHMT2-232ENST00000557487 PILRBQ9UKJ0 227 aa13.88□□□□□ -0.19
SHMT2-232ENST00000557487 OR5B21A6NL26 309 aa13.88□□□□□ -0.19
SHMT2-232ENST00000557487 MPLP40238 635 aa13.88□□□□□ -0.19
SHMT2-232ENST00000557487 FOLR3P41439 243 aa13.88□□□□□ -0.19
SHMT2-232ENST00000557487 TMEM267Q0VDI3 215 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-232ENST00000557487 COA6Q5JTJ3 125 aaKnown RBP13.88□□□□□ -0.19
SHMT2-232ENST00000557487 CYP2G1PQ6ZSU1 146 aa13.88□□□□□ -0.19
SHMT2-232ENST00000557487 C14orf144Q96I85 54 aa13.88□□□□□ -0.19
SHMT2-232ENST00000557487 LIN7CQ9NUP9 197 aaKnown RBP13.88□□□□□ -0.19
SHMT2-232ENST00000557487 A0A0G2JRQ6 117 aa13.87□□□□□ -0.19
SHMT2-232ENST00000557487 SS18L1O75177 396 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-232ENST00000557487 PSG2P11465 335 aa13.87□□□□□ -0.19
SHMT2-232ENST00000557487 FABP4P15090 132 aa13.87□□□□□ -0.19
SHMT2-232ENST00000557487 PAX1P15863 534 aa13.87□□□□□ -0.19
SHMT2-232ENST00000557487 DDTP30046 118 aa13.87□□□□□ -0.19
SHMT2-232ENST00000557487 CENPVQ7Z7K6 275 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-232ENST00000557487 ZNF573Q86YE8 665 aa13.87□□□□□ -0.19
SHMT2-232ENST00000557487 RSG1Q9BU20 258 aa13.87□□□□□ -0.19
SHMT2-232ENST00000557487 WDR61Q9GZS3 305 aaKnown RBP13.87□□□□□ -0.19
SHMT2-232ENST00000557487 FGF23Q9GZV9 251 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-232ENST00000557487 PARD6AQ9NPB6 346 aa13.87□□□□□ -0.19
SHMT2-232ENST00000557487 CACNG5Q9UF02 275 aa13.87□□□□□ -0.19
SHMT2-232ENST00000557487 MPC1Q9Y5U8 109 aa13.87□□□□□ -0.19
SHMT2-232ENST00000557487 MED12Q93074 2177 aa13.87□□□□□ -0.19
SHMT2-232ENST00000557487 RTTNQ86VV8 2226 aa13.86□□□□□ -0.19
SHMT2-232ENST00000557487 MAP1LC3B2A6NCE7 125 aa13.86□□□□□ -0.19
SHMT2-232ENST00000557487 TMEM250H0YL14 139 aa13.86□□□□□ -0.19
SHMT2-232ENST00000557487 MKRN2OSH3BPM6 223 aa13.86□□□□□ -0.19
SHMT2-232ENST00000557487 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-232ENST00000557487 TNFSF12O43508 249 aa13.86□□□□□ -0.19
SHMT2-232ENST00000557487 MRPL33O75394 65 aaKnown RBP13.86□□□□□ -0.19
SHMT2-232ENST00000557487 ZNF726P1Q15940 193 aa13.86□□□□□ -0.19
SHMT2-232ENST00000557487 ZNF468Q5VIY5 522 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-232ENST00000557487 GFI1BQ5VTD9 330 aa13.86□□□□□ -0.19
SHMT2-232ENST00000557487 WDR25Q64LD2 544 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-232ENST00000557487 LCN15Q6UWW0 184 aa13.86□□□□□ -0.19
SHMT2-232ENST00000557487 LILRB2Q8N423 598 aa13.86□□□□□ -0.19
SHMT2-232ENST00000557487 ZNF845Q96IR2 970 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-232ENST00000557487 HIST1H2BLQ99880 126 aa13.86□□□□□ -0.19
SHMT2-232ENST00000557487 PKIBQ9C010 78 aa13.86□□□□□ -0.19
SHMT2-232ENST00000557487 MAP1LC3BQ9GZQ8 125 aa13.86□□□□□ -0.19
SHMT2-232ENST00000557487 SMOC1Q9H4F8 434 aa13.86□□□□□ -0.19
SHMT2-232ENST00000557487 TNRC6AQ8NDV7 1962 aaKnown RBP13.86□□□□□ -0.19
SHMT2-232ENST00000557487 LRRC3CA6NJW4 275 aa13.86□□□□□ -0.19
SHMT2-232ENST00000557487 RNF212BA8MTL3 300 aa13.86□□□□□ -0.19
SHMT2-232ENST00000557487 CEBPZOSA8MTT3 80 aa13.86□□□□□ -0.19
SHMT2-232ENST00000557487 HLA-HP01893 362 aa13.86□□□□□ -0.19
SHMT2-232ENST00000557487 RD3LP0DJH9 198 aa13.86□□□□□ -0.19
SHMT2-232ENST00000557487 FGF7P21781 194 aa13.86□□□□□ -0.19
SHMT2-232ENST00000557487 GAMTQ14353 236 aa13.86□□□□□ -0.19
SHMT2-232ENST00000557487 JOSD1Q15040 202 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-232ENST00000557487 TMEM241Q24JQ0 296 aa13.86□□□□□ -0.19
SHMT2-232ENST00000557487 NCR3LG1Q68D85 454 aa13.86□□□□□ -0.19
SHMT2-232ENST00000557487 ERRFI1Q9UJM3 462 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-232ENST00000557487 H3BP45 60 aa13.85□□□□□ -0.19
SHMT2-232ENST00000557487 NXPH3O95157 252 aa13.85□□□□□ -0.19
SHMT2-232ENST00000557487 MBP02144 154 aa13.85□□□□□ -0.19
SHMT2-232ENST00000557487 ARR3P36575 388 aa13.85□□□□□ -0.19
SHMT2-232ENST00000557487 ARF1P84077 181 aaKnown RBP13.85□□□□□ -0.19
SHMT2-232ENST00000557487 ATP6V1FQ16864 119 aa13.85□□□□□ -0.19
SHMT2-232ENST00000557487 SLC23A3Q6PIS1 610 aa13.85□□□□□ -0.19
SHMT2-232ENST00000557487 SSX9Q7RTT3 188 aa13.85□□□□□ -0.19
SHMT2-232ENST00000557487 OR51H1Q8NH63 302 aa13.85□□□□□ -0.19
SHMT2-232ENST00000557487 OR5P3Q8WZ94 311 aa13.85□□□□□ -0.19
SHMT2-232ENST00000557487 ACY3Q96HD9 319 aa13.85□□□□□ -0.19
SHMT2-232ENST00000557487 GPHA2Q96T91 129 aa13.85□□□□□ -0.19
SHMT2-232ENST00000557487 ZNF737O75373 536 aa13.84□□□□□ -0.19
SHMT2-232ENST00000557487 KBTBD11O94819 623 aa13.84□□□□□ -0.19
SHMT2-232ENST00000557487 PFN1P07737 140 aaKnown RBP13.84□□□□□ -0.19
SHMT2-232ENST00000557487 PGA5P0DJD9 388 aa13.84□□□□□ -0.19
SHMT2-232ENST00000557487 GNG3P63215 75 aa13.84□□□□□ -0.19
SHMT2-232ENST00000557487 CDCP2Q5VXM1 449 aa13.84□□□□□ -0.19
SHMT2-232ENST00000557487 CDPF1Q6NVV7 123 aa13.84□□□□□ -0.19
SHMT2-232ENST00000557487 FAM58AQ8N1B3 248 aa13.84□□□□□ -0.19
SHMT2-232ENST00000557487 IFI44Q8TCB0 444 aa13.84□□□□□ -0.19
SHMT2-232ENST00000557487 NOL4LQ96MY1 436 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-232ENST00000557487 OR5B12Q96R08 314 aa13.84□□□□□ -0.19
SHMT2-232ENST00000557487 GPR87Q9BY21 358 aa13.84□□□□□ -0.19
SHMT2-232ENST00000557487 ACTR3CQ9C0K3 210 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-232ENST00000557487 TMEM9BQ9NQ34 198 aa13.84□□□□□ -0.19
SHMT2-232ENST00000557487 SLC39A9Q9NUM3 307 aa13.84□□□□□ -0.19
SHMT2-232ENST00000557487 PRSS50Q9UI38 385 aa13.84□□□□□ -0.19
SHMT2-232ENST00000557487 GPR179Q6PRD1 2367 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms