RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 SPATA2Q9UM82 520 aa9.27□□□□□ -0.93
CCDC88C-212ENST00000556767 KCNK7Q9Y2U2 307 aa9.27□□□□□ -0.93
CCDC88C-212ENST00000556767 ZFHX3Q15911 3703 aa9.27□□□□□ -0.93
CCDC88C-212ENST00000556767 NIPBLQ6KC79 2804 aaeCLIP9.26□□□□□ -0.93
CCDC88C-212ENST00000556767 TRAV18A0A075B6X5 111 aa9.26□□□□□ -0.93
CCDC88C-212ENST00000556767 TRBV6-6A0A0A6YYG2 114 aa9.26□□□□□ -0.93
CCDC88C-212ENST00000556767 FAM181BA6NEQ2 426 aa9.26□□□□□ -0.93
CCDC88C-212ENST00000556767 GPR137BO60478 399 aa9.26□□□□□ -0.93
CCDC88C-212ENST00000556767 RORCP51449 518 aa9.26□□□□□ -0.93
CCDC88C-212ENST00000556767 ARHGDIBP52566 201 aa9.26□□□□□ -0.93
CCDC88C-212ENST00000556767 GNG2P59768 71 aa9.26□□□□□ -0.93
CCDC88C-212ENST00000556767 HLA-DRB3P79483 266 aa9.26□□□□□ -0.93
CCDC88C-212ENST00000556767 GNMTQ14749 295 aa9.26□□□□□ -0.93
CCDC88C-212ENST00000556767 HMGN3Q15651 99 aa9.26□□□□□ -0.93
CCDC88C-212ENST00000556767 TPTE2P1Q5T6R2 138 aa9.26□□□□□ -0.93
CCDC88C-212ENST00000556767 ZNF880Q6PDB4 577 aa9.26□□□□□ -0.93
CCDC88C-212ENST00000556767 Q6ZPA2 131 aa9.26□□□□□ -0.93
CCDC88C-212ENST00000556767 SAMD12Q8N8I0 201 aa9.26□□□□□ -0.93
CCDC88C-212ENST00000556767 TOMM40LQ969M1 308 aa9.26□□□□□ -0.93
CCDC88C-212ENST00000556767 SLC25A38Q96DW6 304 aa9.26□□□□□ -0.93
CCDC88C-212ENST00000556767 Q9N2K0 584 aa9.26□□□□□ -0.93
CCDC88C-212ENST00000556767 DIABLOQ9NR28 239 aa9.26□□□□□ -0.93
CCDC88C-212ENST00000556767 COMMD3Q9UBI1 195 aa9.26□□□□□ -0.93
CCDC88C-212ENST00000556767 JPT1Q9UK76 154 aa9.26□□□□□ -0.93
CCDC88C-212ENST00000556767 VPREB3Q9UKI3 123 aa9.26□□□□□ -0.93
CCDC88C-212ENST00000556767 MGAT4AQ9UM21 535 aa9.26□□□□□ -0.93
CCDC88C-212ENST00000556767 NF1P21359 2839 aa9.26□□□□□ -0.93
CCDC88C-212ENST00000556767 SVEP1Q4LDE5 3571 aa9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 TMEM235A6NFC5 223 aa9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 CCDC160A6NGH7 325 aa9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 HSPA12AO43301 675 aa9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 RGS11O94810 467 aa9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 FCGR3AP08637 254 aa9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 GSTP1P09211 210 aaKnown RBP9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 SCTP09683 121 aa9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 IL3RAP26951 378 aa9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 BRS3P32247 399 aa9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 PPP1CCP36873 323 aaKnown RBP9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 MNDAP41218 407 aa9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 HTD2P86397 168 aa9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 MADCAM1Q13477 382 aa9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 AANATQ16613 207 aa9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 MORN2Q502X0 79 aa9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 UBE2NLQ5JXB2 153 aa9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 DTX3Q8N9I9 347 aa9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 RAB2BQ8WUD1 216 aa9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 MAFIPQ8WZ33 124 aa9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 AP3S1Q92572 193 aa9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 TAF15Q92804 592 aaKnown RBP eCLIP9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 KCTD12Q96CX2 325 aaKnown RBP9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 S100A16Q96FQ6 103 aaKnown RBP9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 SLC23A1Q9UHI7 598 aa9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 ZNF230Q9UIE0 474 aaPredicted RBP9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 ELF5Q9UKW6 265 aaPredicted RBP9.25□□□□□ -0.93
CCDC88C-212ENST00000556767 POM121CA8CG34 1229 aa9.24□□□□□ -0.93
CCDC88C-212ENST00000556767 TRDCB7Z8K6 153 aa9.24□□□□□ -0.93
CCDC88C-212ENST00000556767 SLC31A2O15432 143 aa9.24□□□□□ -0.93
CCDC88C-212ENST00000556767 KIR2DS4P43632 304 aa9.24□□□□□ -0.93
CCDC88C-212ENST00000556767 TMBIM6P55061 237 aa9.24□□□□□ -0.93
CCDC88C-212ENST00000556767 KIR2DS1Q14954 304 aa9.24□□□□□ -0.93
CCDC88C-212ENST00000556767 SPCS2Q15005 226 aa9.24□□□□□ -0.93
CCDC88C-212ENST00000556767 Q3ZCU0 254 aa9.24□□□□□ -0.93
CCDC88C-212ENST00000556767 HACD4Q5VWC8 232 aa9.24□□□□□ -0.93
CCDC88C-212ENST00000556767 STEAP3Q658P3 488 aa9.24□□□□□ -0.93
CCDC88C-212ENST00000556767 DHRS7BQ6IAN0 325 aaPredicted RBP9.24□□□□□ -0.93
CCDC88C-212ENST00000556767 CCDC144NLQ6NUI1 221 aa9.24□□□□□ -0.93
CCDC88C-212ENST00000556767 MZT2AQ6P582 158 aa9.24□□□□□ -0.93
CCDC88C-212ENST00000556767 LYG1Q8N1E2 194 aa9.24□□□□□ -0.93
CCDC88C-212ENST00000556767 NUDCD2Q8WVJ2 157 aa9.24□□□□□ -0.93
CCDC88C-212ENST00000556767 ACOT12Q8WYK0 555 aa9.24□□□□□ -0.93
CCDC88C-212ENST00000556767 OCSTAMPQ9BR26 566 aa9.24□□□□□ -0.93
CCDC88C-212ENST00000556767 ST6GALNAC5Q9BVH7 336 aa9.24□□□□□ -0.93
CCDC88C-212ENST00000556767 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.24□□□□□ -0.93
CCDC88C-212ENST00000556767 A0A0A6YYH2 397 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 A6NJ64 397 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 VGLL3A8MV65 326 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 OOSP1A8MZH6 123 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 LY6LH3BQJ8 138 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 HSD17B6O14756 317 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 FABP7O15540 132 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 YPEL1O60688 119 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 LPLP06858 475 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 GSTT2P0CG29 244 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 GSTT2BP0CG30 244 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 HKR1P10072 659 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 ZNF182P17025 639 aaPredicted RBP9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 ZBTB25P24278 435 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 CD24P25063 80 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 SOX6P35712 828 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 CEACAM6P40199 344 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 REG1BP48304 166 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 ZNF134P52741 427 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 PITPNAQ00169 270 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 DIAPH2-AS1Q14236 149 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 PNLIPRP3Q17RR3 467 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 ZNF260Q3ZCT1 412 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 CT45A1Q5HYN5 189 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 TMEM69Q5SWH9 247 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 SLC25A48Q6ZT89 311 aaKnown RBP9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 MOB3BQ86TA1 216 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms