RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 GLIPR1P48060 266 aa22.04■■□□□ 1.12
CCDC88C-205ENST00000553403 STOML3Q8TAV4 291 aa22.04■■□□□ 1.12
CCDC88C-205ENST00000553403 GCM1Q9NP62 436 aa22.04■■□□□ 1.12
CCDC88C-205ENST00000553403 MSGN1A6NI15 193 aa22.03■■□□□ 1.12
CCDC88C-205ENST00000553403 VSTM5A8MXK1 200 aa22.03■■□□□ 1.12
CCDC88C-205ENST00000553403 MGST3O14880 152 aa22.03■■□□□ 1.12
CCDC88C-205ENST00000553403 IGLV2-14P01704 120 aa22.03■■□□□ 1.12
CCDC88C-205ENST00000553403 OR4A8P0C604 315 aa22.03■■□□□ 1.12
CCDC88C-205ENST00000553403 OR4D5Q8NGN0 318 aa22.03■■□□□ 1.12
CCDC88C-205ENST00000553403 UBALD1Q8TB05 177 aa22.03■■□□□ 1.12
CCDC88C-205ENST00000553403 RBPMSQ93062 196 aaKnown RBP22.03■■□□□ 1.12
CCDC88C-205ENST00000553403 LSM5Q9Y4Y9 91 aaKnown RBP22.03■■□□□ 1.12
CCDC88C-205ENST00000553403 RBM7Q9Y580 266 aaKnown RBP22.03■■□□□ 1.12
CCDC88C-205ENST00000553403 K7EPK0 472 aa22.02■■□□□ 1.12
CCDC88C-205ENST00000553403 CD55P08174 381 aa22.02■■□□□ 1.12
CCDC88C-205ENST00000553403 FBXL19-AS1Q494R0 122 aa22.02■■□□□ 1.12
CCDC88C-205ENST00000553403 FOXRED2Q8IWF2 684 aa22.02■■□□□ 1.12
CCDC88C-205ENST00000553403 FAM71E2Q8N5Q1 922 aa22.02■■□□□ 1.12
CCDC88C-205ENST00000553403 MRGPRDQ8TDS7 321 aa22.02■■□□□ 1.12
CCDC88C-205ENST00000553403 E5RGE8 158 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 TNFSF12O43508 249 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 NMBP08949 121 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 HKR1P10072 659 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 ZBTB34Q8NCN2 500 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 PCNPQ8WW12 178 aaKnown RBP22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 GPHA2Q96T91 129 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 PLEKHA2Q9HB19 425 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 NSG2Q9Y328 171 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 KALRNO60229 2985 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 IGHV3OR15-7A0A075B7D8 119 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 CLEC18AA5D8T8 446 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 NKX2-6A6NCS4 301 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 TAAR5O14804 337 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 SCGB1D2O95969 90 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 SFTPCP11686 197 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 VDAC1P21796 283 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 MSMO1Q15800 293 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 FAM219AQ8IW50 185 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 CLEC18CQ8NCF0 446 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 OR52M1Q8NGK5 317 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 OR13A1Q8NGR1 328 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 ANGPTL6Q8NI99 470 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 CITED4Q96RK1 184 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 SLC25A32Q9H2D1 315 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 NCOR1P1Q9H4R4 102 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 CYTL1Q9NRR1 136 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 MED9Q9NWA0 146 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 CADP27708 2225 aa22.01■■□□□ 1.11
CCDC88C-205ENST00000553403 BSNQ9UPA5 3926 aa22■■□□□ 1.11
CCDC88C-205ENST00000553403 ST8SIA3O43173 380 aa22■■□□□ 1.11
CCDC88C-205ENST00000553403 OR8U9P0C7N5 309 aa22■■□□□ 1.11
CCDC88C-205ENST00000553403 CR1LQ2VPA4 569 aa22■■□□□ 1.11
CCDC88C-205ENST00000553403 NCMAPQ5T1S8 102 aa22■■□□□ 1.11
CCDC88C-205ENST00000553403 OR8U1Q8NH10 309 aa22■■□□□ 1.11
CCDC88C-205ENST00000553403 ABHD14BQ96IU4 210 aa22■■□□□ 1.11
CCDC88C-205ENST00000553403 PARP12Q9H0J9 701 aaKnown RBP22■■□□□ 1.11
CCDC88C-205ENST00000553403 ESRP2Q9H6T0 727 aaKnown RBP22■■□□□ 1.11
CCDC88C-205ENST00000553403 KCNS2Q9ULS6 477 aa22■■□□□ 1.11
CCDC88C-205ENST00000553403 POMT1Q9Y6A1 747 aa22■■□□□ 1.11
CCDC88C-205ENST00000553403 K7N7A8 449 aa21.99■■□□□ 1.11
CCDC88C-205ENST00000553403 RRASP10301 218 aa21.99■■□□□ 1.11
CCDC88C-205ENST00000553403 TPT1P13693 172 aaKnown RBP21.99■■□□□ 1.11
CCDC88C-205ENST00000553403 CHRNB4P30926 498 aa21.99■■□□□ 1.11
CCDC88C-205ENST00000553403 CD80P33681 288 aa21.99■■□□□ 1.11
CCDC88C-205ENST00000553403 NMSQ5H8A3 153 aa21.99■■□□□ 1.11
CCDC88C-205ENST00000553403 COMMD7Q86VX2 200 aa21.99■■□□□ 1.11
CCDC88C-205ENST00000553403 NINJ1Q92982 152 aa21.99■■□□□ 1.11
CCDC88C-205ENST00000553403 C17orf100A8MU93 164 aa21.98■■□□□ 1.11
CCDC88C-205ENST00000553403 C15orf65H3BRN8 121 aa21.98■■□□□ 1.11
CCDC88C-205ENST00000553403 CCL21O00585 134 aa21.98■■□□□ 1.11
CCDC88C-205ENST00000553403 SPINT2O43291 252 aa21.98■■□□□ 1.11
CCDC88C-205ENST00000553403 TNFRSF1AP19438 455 aa21.98■■□□□ 1.11
CCDC88C-205ENST00000553403 GZMHP20718 246 aa21.98■■□□□ 1.11
CCDC88C-205ENST00000553403 RPL12P30050 165 aaKnown RBP21.98■■□□□ 1.11
CCDC88C-205ENST00000553403 HTD2P86397 168 aa21.98■■□□□ 1.11
CCDC88C-205ENST00000553403 ZNF645Q8N7E2 425 aa21.98■■□□□ 1.11
CCDC88C-205ENST00000553403 OR52L2PQ8NGH6 319 aa21.98■■□□□ 1.11
CCDC88C-205ENST00000553403 OR51H1Q8NH63 302 aa21.98■■□□□ 1.11
CCDC88C-205ENST00000553403 ARL11Q969Q4 196 aa21.98■■□□□ 1.11
CCDC88C-205ENST00000553403 PPP1R3CQ9UQK1 317 aa21.98■■□□□ 1.11
CCDC88C-205ENST00000553403 ODAMA1E959 279 aa21.98■■□□□ 1.11
CCDC88C-205ENST00000553403 RNF212BA8MTL3 300 aa21.98■■□□□ 1.11
CCDC88C-205ENST00000553403 SERPINE2P07093 398 aa21.98■■□□□ 1.11
CCDC88C-205ENST00000553403 EDDM3AQ14507 147 aa21.98■■□□□ 1.11
CCDC88C-205ENST00000553403 ADAM5Q6NVV9 412 aa21.98■■□□□ 1.11
CCDC88C-205ENST00000553403 ZNF561Q8N587 486 aa21.98■■□□□ 1.11
CCDC88C-205ENST00000553403 DRAM1Q8N682 238 aa21.98■■□□□ 1.11
CCDC88C-205ENST00000553403 TPRX1Q8N7U7 411 aa21.98■■□□□ 1.11
CCDC88C-205ENST00000553403 RNASE6Q93091 150 aaKnown RBP21.98■■□□□ 1.11
CCDC88C-205ENST00000553403 SDSLQ96GA7 329 aa21.98■■□□□ 1.11
CCDC88C-205ENST00000553403 LIN7CQ9NUP9 197 aaKnown RBP21.98■■□□□ 1.11
CCDC88C-205ENST00000553403 IRF2P14316 349 aa21.97■■□□□ 1.11
CCDC88C-205ENST00000553403 THOC7Q6I9Y2 204 aaKnown RBP21.97■■□□□ 1.11
CCDC88C-205ENST00000553403 PDZD9Q8IXQ8 264 aa21.97■■□□□ 1.11
CCDC88C-205ENST00000553403 PLEKHF2Q9H8W4 249 aa21.97■■□□□ 1.11
CCDC88C-205ENST00000553403 ZC4H2Q9NQZ6 224 aa21.97■■□□□ 1.11
CCDC88C-205ENST00000553403 FASNP49327 2511 aaKnown RBP21.97■■□□□ 1.11
CCDC88C-205ENST00000553403 B8ZZF3 427 aa21.96■■□□□ 1.11
CCDC88C-205ENST00000553403 ADAM20O43506 726 aa21.96■■□□□ 1.11
CCDC88C-205ENST00000553403 SLC25A6P12236 298 aa21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms