RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 WDR86Q86TI4 376 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 HAPLN4Q86UW8 402 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 SAXO1Q8IYX7 474 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 H1FOOQ8IZA3 346 aaPredicted RBP6.36□□□□□ -1.39
LIMA1-213ENST00000552720 FAM58AQ8N1B3 248 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 TMEM251Q8N6I4 163 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 RNASE11Q8TAA1 199 aaKnown RBP6.36□□□□□ -1.39
LIMA1-213ENST00000552720 MALSU1Q96EH3 234 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 FAM173AQ9BQD7 235 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 BCL2L14Q9BZR8 327 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 PRO3102Q9H379 93 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 ZNF665Q9H7R5 613 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 RPRMQ9NS64 109 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 GNG13Q9P2W3 67 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 SVILO95425 2214 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 ZFP92A6NM28 416 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 ANKRD30BLA7E2S9 258 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 LAMTOR5O43504 91 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 SYNGR4O95473 234 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 CNOT4O95628 575 aaKnown RBP6.36□□□□□ -1.39
LIMA1-213ENST00000552720 MT-CO3P00414 261 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 IGKV1-5P01602 117 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 SERPINE2P07093 398 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 CELA3BP08861 270 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 HOXA6P31267 233 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 ERVS71-1P61550 626 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 S100A12P80511 92 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 BAXQ07812 192 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 IL24Q13007 206 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 ZNF506Q5JVG8 444 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 ABHD17BQ5VST6 288 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 PEAR1Q5VY43 1037 aaPredicted RBP6.36□□□□□ -1.39
LIMA1-213ENST00000552720 LCN15Q6UWW0 184 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 GNPNAT1Q96EK6 184 aaPredicted RBP6.36□□□□□ -1.39
LIMA1-213ENST00000552720 CDX2Q99626 313 aaPredicted RBP6.36□□□□□ -1.39
LIMA1-213ENST00000552720 ZNF251Q9BRH9 671 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 MIOXQ9UGB7 285 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 TRAV20A0A0B4J274 112 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 DUXBA0A1W2PPF3 345 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 IL18BPO95998 194 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 TFF1P04155 84 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 CTXN2P0C2S0 81 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 CEACAM1P13688 526 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 HOXB1P14653 301 aaPredicted RBP6.35□□□□□ -1.39
LIMA1-213ENST00000552720 MAS1LP35410 378 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 EIF2S3P41091 472 aaKnown RBP6.35□□□□□ -1.39
LIMA1-213ENST00000552720 CEBPDP49716 269 aaPredicted RBP6.35□□□□□ -1.39
LIMA1-213ENST00000552720 NDUFA6P56556 154 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 TESK1Q15569 626 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 ZNF674Q2M3X9 581 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 ALKBH6Q3KRA9 238 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 ZNF585BQ52M93 769 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 Q6P435 159 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 STX12Q86Y82 276 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 OR10V1Q8NGI7 309 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 EDARADDQ8WWZ3 215 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 ABHD14BQ96IU4 210 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 IER2Q9BTL4 223 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 KCNS2Q9ULS6 477 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 PTPRBP23467 1997 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 DCHS1Q96JQ0 3298 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 LOC102723971A0A1B0GUV8 181 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 DEGS1O15121 323 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 WDR1O75083 606 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 COX5BP10606 129 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 ACP1P24666 158 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 RAB11AP62491 216 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 GNG3P63215 75 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 PLGLB1Q02325 96 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 TLE4Q04727 773 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 PLP2Q04941 152 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 RNPS1Q15287 305 aaKnown RBP6.35□□□□□ -1.39
LIMA1-213ENST00000552720 ZNF880Q6PDB4 577 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 SPNS3Q6ZMD2 512 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 MDP1Q86V88 176 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 OR8G5Q8NG78 346 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 TVP23CQ96ET8 276 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 DEFB127Q9H1M4 99 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 OR51I2Q9H344 312 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 SMDT1Q9H4I9 107 aa6.35□□□□□ -1.39
LIMA1-213ENST00000552720 RBM7Q9Y580 266 aaKnown RBP6.35□□□□□ -1.39
LIMA1-213ENST00000552720 BTBD17A6NE02 478 aa6.34□□□□□ -1.39
LIMA1-213ENST00000552720 HMGB3O15347 200 aaKnown RBP6.34□□□□□ -1.39
LIMA1-213ENST00000552720 CYB5BO43169 146 aa6.34□□□□□ -1.39
LIMA1-213ENST00000552720 SYNGR2O43760 224 aa6.34□□□□□ -1.39
LIMA1-213ENST00000552720 OR2H2O95918 312 aa6.34□□□□□ -1.39
LIMA1-213ENST00000552720 IFNA17P01571 189 aa6.34□□□□□ -1.39
LIMA1-213ENST00000552720 HSPB1P04792 205 aaKnown RBP6.34□□□□□ -1.39
LIMA1-213ENST00000552720 MMP9P14780 707 aa6.34□□□□□ -1.39
LIMA1-213ENST00000552720 MDKP21741 143 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-213ENST00000552720 APLNRP35414 380 aa6.34□□□□□ -1.39
LIMA1-213ENST00000552720 ARR3P36575 388 aa6.34□□□□□ -1.39
LIMA1-213ENST00000552720 ELLP55199 621 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-213ENST00000552720 RPS16P62249 146 aaKnown RBP6.34□□□□□ -1.39
LIMA1-213ENST00000552720 CLN3Q13286 438 aa6.34□□□□□ -1.39
LIMA1-213ENST00000552720 PDZD11Q5EBL8 140 aa6.34□□□□□ -1.39
LIMA1-213ENST00000552720 OR2B11Q5JQS5 317 aa6.34□□□□□ -1.39
LIMA1-213ENST00000552720 GFI1BQ5VTD9 330 aa6.34□□□□□ -1.39
LIMA1-213ENST00000552720 FAM90A2PQ658T7 463 aa6.34□□□□□ -1.39
LIMA1-213ENST00000552720 BEND4Q6ZU67 534 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms