RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 PRSS3P35030 304 aa11.19□□□□□ -0.62
PTCH1-213ENST00000546820 TAS2R20P59543 309 aa11.19□□□□□ -0.62
PTCH1-213ENST00000546820 BAMBIQ13145 260 aa11.19□□□□□ -0.62
PTCH1-213ENST00000546820 MORN2Q502X0 79 aa11.19□□□□□ -0.62
PTCH1-213ENST00000546820 BAIAP2L2Q6UXY1 529 aa11.19□□□□□ -0.62
PTCH1-213ENST00000546820 Q6ZS49 121 aa11.19□□□□□ -0.62
PTCH1-213ENST00000546820 IZUMO1Q8IYV9 350 aa11.19□□□□□ -0.62
PTCH1-213ENST00000546820 SIGLECL1Q8N7X8 197 aa11.19□□□□□ -0.62
PTCH1-213ENST00000546820 C8orf31Q8N9H6 132 aa11.19□□□□□ -0.62
PTCH1-213ENST00000546820 OR4A4PQ8NGN8 299 aa11.19□□□□□ -0.62
PTCH1-213ENST00000546820 OR10X1Q8NGY0 326 aa11.19□□□□□ -0.62
PTCH1-213ENST00000546820 YPEL2Q96QA6 119 aa11.19□□□□□ -0.62
PTCH1-213ENST00000546820 C6orf62Q9GZU0 229 aaPredicted RBP11.19□□□□□ -0.62
PTCH1-213ENST00000546820 MEGF9Q9H1U4 602 aa11.19□□□□□ -0.62
PTCH1-213ENST00000546820 MMP28Q9H239 520 aa11.19□□□□□ -0.62
PTCH1-213ENST00000546820 ZNF230Q9UIE0 474 aaPredicted RBP11.19□□□□□ -0.62
PTCH1-213ENST00000546820 ELF5Q9UKW6 265 aaPredicted RBP11.19□□□□□ -0.62
PTCH1-213ENST00000546820 IGHV3-43A0A0B4J1X8 118 aa11.18□□□□□ -0.62
PTCH1-213ENST00000546820 BUB1B-PAK6H3BSN5 160 aa11.18□□□□□ -0.62
PTCH1-213ENST00000546820 CTDSP2O14595 271 aa11.18□□□□□ -0.62
PTCH1-213ENST00000546820 FABP7O15540 132 aa11.18□□□□□ -0.62
PTCH1-213ENST00000546820 DIRAS3O95661 229 aa11.18□□□□□ -0.62
PTCH1-213ENST00000546820 IGLV1-47P01700 117 aa11.18□□□□□ -0.62
PTCH1-213ENST00000546820 IGHV3-7P01780 117 aa11.18□□□□□ -0.62
PTCH1-213ENST00000546820 SCTP09683 121 aa11.18□□□□□ -0.62
PTCH1-213ENST00000546820 CTXN2P0C2S0 81 aa11.18□□□□□ -0.62
PTCH1-213ENST00000546820 IGHV3-43DP0DP04 118 aa11.18□□□□□ -0.62
PTCH1-213ENST00000546820 IL3RAP26951 378 aa11.18□□□□□ -0.62
PTCH1-213ENST00000546820 ARHGDIBP52566 201 aa11.18□□□□□ -0.62
PTCH1-213ENST00000546820 HLA-DRB5Q30154 266 aa11.18□□□□□ -0.62
PTCH1-213ENST00000546820 LY6G6FQ5SQ64 297 aa11.18□□□□□ -0.62
PTCH1-213ENST00000546820 Q6YL49 198 aa11.18□□□□□ -0.62
PTCH1-213ENST00000546820 LINC00311Q8N616 119 aa11.18□□□□□ -0.62
PTCH1-213ENST00000546820 DTX3Q8N9I9 347 aa11.18□□□□□ -0.62
PTCH1-213ENST00000546820 OR52L2PQ8NGH6 319 aa11.18□□□□□ -0.62
PTCH1-213ENST00000546820 NUDCD2Q8WVJ2 157 aa11.18□□□□□ -0.62
PTCH1-213ENST00000546820 LEAP2Q969E1 77 aa11.18□□□□□ -0.62
PTCH1-213ENST00000546820 OCSTAMPQ9BR26 566 aa11.18□□□□□ -0.62
PTCH1-213ENST00000546820 DCUN1D5Q9BTE7 237 aa11.18□□□□□ -0.62
PTCH1-213ENST00000546820 SLIRPQ9GZT3 109 aaKnown RBP11.18□□□□□ -0.62
PTCH1-213ENST00000546820 DPAGT1Q9H3H5 408 aa11.18□□□□□ -0.62
PTCH1-213ENST00000546820 RABL2AQ9UBK7 228 aaPredicted RBP11.18□□□□□ -0.62
PTCH1-213ENST00000546820 RABL2BQ9UNT1 228 aa11.18□□□□□ -0.62
PTCH1-213ENST00000546820 SOX21Q9Y651 276 aaPredicted RBP11.18□□□□□ -0.62
PTCH1-213ENST00000546820 BTBD17A6NE02 478 aa11.17□□□□□ -0.62
PTCH1-213ENST00000546820 OOSP1A8MZH6 123 aa11.17□□□□□ -0.62
PTCH1-213ENST00000546820 LPLP06858 475 aa11.17□□□□□ -0.62
PTCH1-213ENST00000546820 CEACAM6P40199 344 aa11.17□□□□□ -0.62
PTCH1-213ENST00000546820 GNG10P50151 68 aa11.17□□□□□ -0.62
PTCH1-213ENST00000546820 HILS1P60008 231 aa11.17□□□□□ -0.62
PTCH1-213ENST00000546820 MADCAM1Q13477 382 aa11.17□□□□□ -0.62
PTCH1-213ENST00000546820 SSX2Q16385 188 aa11.17□□□□□ -0.62
PTCH1-213ENST00000546820 AANATQ16613 207 aa11.17□□□□□ -0.62
PTCH1-213ENST00000546820 TUSC1Q2TAM9 212 aa11.17□□□□□ -0.62
PTCH1-213ENST00000546820 CCDC144NLQ6NUI1 221 aa11.17□□□□□ -0.62
PTCH1-213ENST00000546820 LHFPL4Q7Z7J7 247 aa11.17□□□□□ -0.62
PTCH1-213ENST00000546820 OR10V1Q8NGI7 309 aa11.17□□□□□ -0.62
PTCH1-213ENST00000546820 OR4P4Q8NGL7 312 aa11.17□□□□□ -0.62
PTCH1-213ENST00000546820 OR10J5Q8NHC4 309 aa11.17□□□□□ -0.62
PTCH1-213ENST00000546820 SSMEM1Q8WWF3 244 aa11.17□□□□□ -0.62
PTCH1-213ENST00000546820 EDARADDQ8WWZ3 215 aa11.17□□□□□ -0.62
PTCH1-213ENST00000546820 ZNF48Q96MX3 618 aaPredicted RBP11.17□□□□□ -0.62
PTCH1-213ENST00000546820 MMP27Q9H306 513 aa11.17□□□□□ -0.62
PTCH1-213ENST00000546820 IFT46Q9NQC8 304 aa11.17□□□□□ -0.62
PTCH1-213ENST00000546820 EXTL2Q9UBQ6 330 aa11.17□□□□□ -0.62
PTCH1-213ENST00000546820 SLC23A1Q9UHI7 598 aa11.17□□□□□ -0.62
PTCH1-213ENST00000546820 A3GALT2U3KPV4 340 aa11.17□□□□□ -0.62
PTCH1-213ENST00000546820 MXRA5Q9NR99 2828 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 TRIM77I1YAP6 450 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 SSX5O60225 188 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 HLA-DQB1P01920 261 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 GSTT2P0CG29 244 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 GSTT2BP0CG30 244 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 BRS3P32247 399 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 S100A5P33763 92 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 PPP1CCP36873 323 aaKnown RBP11.16□□□□□ -0.62
PTCH1-213ENST00000546820 RAB7AP51149 207 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 CNIH2Q6PI25 160 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 Q6ZPA2 131 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 SLC25A48Q6ZT89 311 aaKnown RBP11.16□□□□□ -0.62
PTCH1-213ENST00000546820 C5orf24Q7Z6I8 188 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 HOGA1Q86XE5 327 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 LDLRAD3Q86YD5 345 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 TMEM86BQ8N661 226 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 OR2AK2Q8NG84 335 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 RPEQ96AT9 228 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 DIRAS2Q96HU8 199 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 GINS4Q9BRT9 223 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 NXF2Q9GZY0 626 aaKnown RBP11.16□□□□□ -0.62
PTCH1-213ENST00000546820 MIXL1Q9H2W2 232 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 GHITMQ9H3K2 345 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 SCPEP1Q9HB40 452 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 BATF3Q9NR55 127 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 ABCB10Q9NRK6 738 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 ZNRD1Q9P1U0 126 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 HILPDAQ9Y5L2 63 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 POMT1Q9Y6A1 747 aa11.16□□□□□ -0.62
PTCH1-213ENST00000546820 SETD2Q9BYW2 2564 aaPredicted RBP11.16□□□□□ -0.62
PTCH1-213ENST00000546820 MDFIC2A0A1B0GVS7 189 aa11.15□□□□□ -0.62
PTCH1-213ENST00000546820 A0A1W2PPE3 182 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms