RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 SCCPDHQ8NBX0 429 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 OR5D13Q8NGL4 314 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 OR1N1Q8NGS0 311 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 MRGPRX4Q96LA9 322 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 HIPK2Q9H2X6 1198 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 PLXND1Q9Y4D7 1925 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 LILRA5A6NI73 299 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 SNURFLB1AK76 121 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 ZNHIT1O43257 154 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 CDC34P49427 236 aaPredicted RBP12.37□□□□□ -0.43
LIMS1-215ENST00000544547 CLDN15P56746 228 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 SCGB2A2Q13296 93 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 GAB4Q2WGN9 574 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 ATOH7Q8N100 152 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 SLC24A4Q8NFF2 622 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 ACY3Q96HD9 319 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 DECR2Q9NUI1 292 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 TUBD1Q9UJT1 453 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 LOXL2Q9Y4K0 774 aa12.37□□□□□ -0.43
LIMS1-215ENST00000544547 SCN8AQ9UQD0 1980 aa12.36□□□□□ -0.43
LIMS1-215ENST00000544547 FANCMQ8IYD8 2048 aa12.36□□□□□ -0.43
LIMS1-215ENST00000544547 SMIM10L1P0DMW3 83 aa12.36□□□□□ -0.43
LIMS1-215ENST00000544547 CD33P20138 364 aa12.36□□□□□ -0.43
LIMS1-215ENST00000544547 ZNF506Q5JVG8 444 aa12.36□□□□□ -0.43
LIMS1-215ENST00000544547 ABLIM2Q6H8Q1 611 aa12.36□□□□□ -0.43
LIMS1-215ENST00000544547 KMT5CQ86Y97 462 aa12.36□□□□□ -0.43
LIMS1-215ENST00000544547 OR10G8Q8NGN5 311 aa12.36□□□□□ -0.43
LIMS1-215ENST00000544547 SMIM10Q96HG1 83 aa12.36□□□□□ -0.43
LIMS1-215ENST00000544547 C5orf49A4QMS7 147 aa12.36□□□□□ -0.43
LIMS1-215ENST00000544547 IGFBP3P17936 291 aaPredicted RBP12.36□□□□□ -0.43
LIMS1-215ENST00000544547 FUT6P51993 359 aa12.36□□□□□ -0.43
LIMS1-215ENST00000544547 LGALS4P56470 323 aa12.36□□□□□ -0.43
LIMS1-215ENST00000544547 LINC00114Q6XXX2 140 aa12.36□□□□□ -0.43
LIMS1-215ENST00000544547 RNF144BQ7Z419 303 aa12.36□□□□□ -0.43
LIMS1-215ENST00000544547 C2orf88Q9BSF0 95 aa12.36□□□□□ -0.43
LIMS1-215ENST00000544547 HIF1ANQ9NWT6 349 aa12.36□□□□□ -0.43
LIMS1-215ENST00000544547 RRP8O43159 456 aaKnown RBP12.36□□□□□ -0.43
LIMS1-215ENST00000544547 S100A7AQ86SG5 101 aa12.36□□□□□ -0.43
LIMS1-215ENST00000544547 RBMXL3Q8N7X1 1067 aaKnown RBP12.36□□□□□ -0.43
LIMS1-215ENST00000544547 RTL8AQ9BWD3 113 aa12.36□□□□□ -0.43
LIMS1-215ENST00000544547 PHF3Q92576 2039 aaKnown RBP12.36□□□□□ -0.43
LIMS1-215ENST00000544547 OR7C2O60412 319 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 OR4A8P0C604 315 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 ICAM4Q14773 271 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 ERASQ7Z444 233 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 POLDIP2Q9Y2S7 368 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 C1QL4Q86Z23 238 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 OR10V1Q8NGI7 309 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 CLDN23Q96B33 292 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 WNT16Q9UBV4 365 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 ZNF891A8MT65 544 aaPredicted RBP12.35□□□□□ -0.43
LIMS1-215ENST00000544547 HOXA6P31267 233 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 HYAL1Q12794 435 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 HES1Q14469 280 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 RNASEKQ6P5S7 137 aaKnown RBP12.35□□□□□ -0.43
LIMS1-215ENST00000544547 OR10G3Q8NGC4 313 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 SARAFQ96BY9 339 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 LIN7CQ9NUP9 197 aaKnown RBP12.35□□□□□ -0.43
LIMS1-215ENST00000544547 ACACAQ13085 2346 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 IGKV1D-8A0A087WSZ0 117 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 LOC102723971A0A1B0GUV8 181 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 LRRC30A6NM36 301 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 PIAS2O75928 621 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 NDUFB4O95168 129 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 PSG2P11465 335 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 HLA-DRB5Q30154 266 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 HLA-BQ31612 363 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 PRAMEF5Q5TYX0 476 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 PRAMEF6Q5VXH4 476 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 LEMD1Q68G75 181 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 MRPL54Q6P161 138 aaKnown RBP12.35□□□□□ -0.43
LIMS1-215ENST00000544547 UNQ6494/PRO21346Q6UXR6 183 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 LRRC75AQ8NAA5 344 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 OR5R1Q8NH85 324 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 ZNF519Q8TB69 540 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 SPACA9Q96E40 222 aaPredicted RBP12.35□□□□□ -0.43
LIMS1-215ENST00000544547 MANBALQ9NQG1 85 aa12.35□□□□□ -0.43
LIMS1-215ENST00000544547 A0A087WWC5 75 aa12.34□□□□□ -0.43
LIMS1-215ENST00000544547 PRRG2O14669 202 aa12.34□□□□□ -0.43
LIMS1-215ENST00000544547 OR5G3P0C626 314 aa12.34□□□□□ -0.43
LIMS1-215ENST00000544547 KIAA1644Q3SXP7 199 aa12.34□□□□□ -0.43
LIMS1-215ENST00000544547 C10orf91Q5T1B1 145 aa12.34□□□□□ -0.43
LIMS1-215ENST00000544547 C1orf53Q5VUE5 145 aa12.34□□□□□ -0.43
LIMS1-215ENST00000544547 GABRG3Q99928 467 aa12.34□□□□□ -0.43
LIMS1-215ENST00000544547 PARD6GQ9BYG4 376 aaPredicted RBP12.34□□□□□ -0.43
LIMS1-215ENST00000544547 EGLN1Q9GZT9 426 aa12.34□□□□□ -0.43
LIMS1-215ENST00000544547 TOX4O94842 621 aa12.34□□□□□ -0.43
LIMS1-215ENST00000544547 EIF3IQ13347 325 aaKnown RBP12.34□□□□□ -0.43
LIMS1-215ENST00000544547 SPATA45Q537H7 98 aa12.34□□□□□ -0.43
LIMS1-215ENST00000544547 OR5B3Q8NH48 314 aa12.34□□□□□ -0.43
LIMS1-215ENST00000544547 PARLQ9H300 379 aa12.34□□□□□ -0.43
LIMS1-215ENST00000544547 LIPT2A6NK58 231 aa12.34□□□□□ -0.43
LIMS1-215ENST00000544547 TNFSF15O95150 251 aa12.34□□□□□ -0.43
LIMS1-215ENST00000544547 POU2F2P09086 479 aa12.34□□□□□ -0.43
LIMS1-215ENST00000544547 MPLP40238 635 aa12.34□□□□□ -0.43
LIMS1-215ENST00000544547 TMEM222Q9H0R3 208 aa12.34□□□□□ -0.43
LIMS1-215ENST00000544547 ARRDC1-AS1Q9H2J1 176 aa12.34□□□□□ -0.43
LIMS1-215ENST00000544547 K7N7A8 449 aa12.33□□□□□ -0.43
LIMS1-215ENST00000544547 CBR3O75828 277 aa12.33□□□□□ -0.43
LIMS1-215ENST00000544547 CCL2P13500 99 aa12.33□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms