RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 GAPDHP04406 335 aaKnown RBP12.04□□□□□ -0.48
VPS33A-209ENST00000544349 IGKV1-13P0DP09 117 aa12.04□□□□□ -0.48
VPS33A-209ENST00000544349 Q6ZRG5 221 aa12.04□□□□□ -0.48
VPS33A-209ENST00000544349 CBLN2Q8IUK8 224 aa12.04□□□□□ -0.48
VPS33A-209ENST00000544349 UQCC1Q9NVA1 299 aa12.04□□□□□ -0.48
VPS33A-209ENST00000544349 RCL1Q9Y2P8 373 aaKnown RBP12.04□□□□□ -0.48
VPS33A-209ENST00000544349 CHD8Q9HCK8 2581 aa12.03□□□□□ -0.48
VPS33A-209ENST00000544349 TRBV6-6A0A0A6YYG2 114 aa12.03□□□□□ -0.48
VPS33A-209ENST00000544349 FAM90A27PA6NNH2 459 aa12.03□□□□□ -0.48
VPS33A-209ENST00000544349 E5RGE8 158 aa12.03□□□□□ -0.48
VPS33A-209ENST00000544349 GNRHRP30968 328 aa12.03□□□□□ -0.48
VPS33A-209ENST00000544349 NPBWR1P48145 328 aa12.03□□□□□ -0.48
VPS33A-209ENST00000544349 BTNL8Q6UX41 500 aa12.03□□□□□ -0.48
VPS33A-209ENST00000544349 ACP7Q6ZNF0 438 aa12.03□□□□□ -0.48
VPS33A-209ENST00000544349 LGI3Q8N145 548 aa12.03□□□□□ -0.48
VPS33A-209ENST00000544349 CLRN3Q8NCR9 226 aa12.03□□□□□ -0.48
VPS33A-209ENST00000544349 DMBX1Q8NFW5 382 aa12.03□□□□□ -0.48
VPS33A-209ENST00000544349 MRPL30Q8TCC3 161 aaKnown RBP12.03□□□□□ -0.48
VPS33A-209ENST00000544349 SAT2Q96F10 170 aaPredicted RBP12.03□□□□□ -0.48
VPS33A-209ENST00000544349 OR2V2Q96R30 315 aa12.03□□□□□ -0.48
VPS33A-209ENST00000544349 NSG2Q9Y328 171 aa12.03□□□□□ -0.48
VPS33A-209ENST00000544349 C3orf85A0A1B0GTC6 90 aa12.02□□□□□ -0.48
VPS33A-209ENST00000544349 C9JQL5 133 aa12.02□□□□□ -0.48
VPS33A-209ENST00000544349 SPRY3O43610 288 aa12.02□□□□□ -0.48
VPS33A-209ENST00000544349 HAND1O96004 215 aa12.02□□□□□ -0.48
VPS33A-209ENST00000544349 OR8U9P0C7N5 309 aa12.02□□□□□ -0.48
VPS33A-209ENST00000544349 KCNJ3P48549 501 aa12.02□□□□□ -0.48
VPS33A-209ENST00000544349 CAV2P51636 162 aa12.02□□□□□ -0.48
VPS33A-209ENST00000544349 EIF5AP63241 154 aaKnown RBP12.02□□□□□ -0.48
VPS33A-209ENST00000544349 HOXA4Q00056 320 aaPredicted RBP12.02□□□□□ -0.48
VPS33A-209ENST00000544349 SPRNQ5BIV9 151 aa12.02□□□□□ -0.48
VPS33A-209ENST00000544349 C20orf204Q6ZNR8 217 aa12.02□□□□□ -0.48
VPS33A-209ENST00000544349 ZNF818PQ6ZRF7 136 aa12.02□□□□□ -0.48
VPS33A-209ENST00000544349 SVBPQ8N300 66 aa12.02□□□□□ -0.48
VPS33A-209ENST00000544349 CCDC71LQ8N9Z2 235 aa12.02□□□□□ -0.48
VPS33A-209ENST00000544349 OR4D5Q8NGN0 318 aa12.02□□□□□ -0.48
VPS33A-209ENST00000544349 OR8U1Q8NH10 309 aa12.02□□□□□ -0.48
VPS33A-209ENST00000544349 SECTM1Q8WVN6 248 aa12.02□□□□□ -0.48
VPS33A-209ENST00000544349 RNASE6Q93091 150 aaKnown RBP12.02□□□□□ -0.48
VPS33A-209ENST00000544349 MEGF10Q96KG7 1140 aa12.02□□□□□ -0.48
VPS33A-209ENST00000544349 TREM2Q9NZC2 230 aa12.02□□□□□ -0.48
VPS33A-209ENST00000544349 OR14J1Q9UGF5 321 aa12.02□□□□□ -0.48
VPS33A-209ENST00000544349 ATP23Q9Y6H3 246 aa12.02□□□□□ -0.48
VPS33A-209ENST00000544349 SPTA1P02549 2419 aa12.02□□□□□ -0.49
VPS33A-209ENST00000544349 NKX2-6A6NCS4 301 aa12.02□□□□□ -0.49
VPS33A-209ENST00000544349 NUDT19A8MXV4 375 aa12.02□□□□□ -0.49
VPS33A-209ENST00000544349 MPPED1O15442 326 aa12.02□□□□□ -0.49
VPS33A-209ENST00000544349 MDH2P40926 338 aaKnown RBP12.02□□□□□ -0.49
VPS33A-209ENST00000544349 SHEQ5VZ18 495 aa12.02□□□□□ -0.49
VPS33A-209ENST00000544349 ZNF880Q6PDB4 577 aa12.02□□□□□ -0.49
VPS33A-209ENST00000544349 TBC1D26Q86UD7 250 aa12.02□□□□□ -0.49
VPS33A-209ENST00000544349 OR10Z1Q8NGY1 313 aa12.02□□□□□ -0.49
VPS33A-209ENST00000544349 LRRC29Q8WV35 223 aa12.02□□□□□ -0.49
VPS33A-209ENST00000544349 SH3BGRL3Q9H299 93 aa12.02□□□□□ -0.49
VPS33A-209ENST00000544349 PLEKHA2Q9HB19 425 aa12.02□□□□□ -0.49
VPS33A-209ENST00000544349 ZZEF1O43149 2961 aa12.02□□□□□ -0.49
VPS33A-209ENST00000544349 JTBO76095 146 aa12.01□□□□□ -0.49
VPS33A-209ENST00000544349 LMO1P25800 156 aa12.01□□□□□ -0.49
VPS33A-209ENST00000544349 CFHR2P36980 270 aa12.01□□□□□ -0.49
VPS33A-209ENST00000544349 CEBPDP49716 269 aaPredicted RBP12.01□□□□□ -0.49
VPS33A-209ENST00000544349 NCMAPQ5T1S8 102 aa12.01□□□□□ -0.49
VPS33A-209ENST00000544349 GAPTQ8N292 157 aa12.01□□□□□ -0.49
VPS33A-209ENST00000544349 UBAC2Q8NBM4 344 aa12.01□□□□□ -0.49
VPS33A-209ENST00000544349 PLPPR1Q8TBJ4 325 aa12.01□□□□□ -0.49
VPS33A-209ENST00000544349 TMEM222Q9H0R3 208 aa12.01□□□□□ -0.49
VPS33A-209ENST00000544349 ARV1Q9H2C2 271 aa12.01□□□□□ -0.49
VPS33A-209ENST00000544349 ESRP2Q9H6T0 727 aaKnown RBP12.01□□□□□ -0.49
VPS33A-209ENST00000544349 ATRXP46100 2492 aa12.01□□□□□ -0.49
VPS33A-209ENST00000544349 KIR2DS1A0A191URI9 304 aa12.01□□□□□ -0.49
VPS33A-209ENST00000544349 TRDCB7Z8K6 153 aa12.01□□□□□ -0.49
VPS33A-209ENST00000544349 FAM157AC9JC47 383 aa12.01□□□□□ -0.49
VPS33A-209ENST00000544349 GPR137BO60478 399 aa12.01□□□□□ -0.49
VPS33A-209ENST00000544349 SFTA3P0C7M3 94 aa12.01□□□□□ -0.49
VPS33A-209ENST00000544349 KIR2DS4P43632 304 aa12.01□□□□□ -0.49
VPS33A-209ENST00000544349 NHLH2Q02577 135 aa12.01□□□□□ -0.49
VPS33A-209ENST00000544349 KIR2DS1Q14954 304 aa12.01□□□□□ -0.49
VPS33A-209ENST00000544349 ADIPOQQ15848 244 aa12.01□□□□□ -0.49
VPS33A-209ENST00000544349 ADAM5Q6NVV9 412 aa12.01□□□□□ -0.49
VPS33A-209ENST00000544349 ITLN1Q8WWA0 313 aa12.01□□□□□ -0.49
VPS33A-209ENST00000544349 C11orf1Q9H5F2 150 aa12.01□□□□□ -0.49
VPS33A-209ENST00000544349 PARP11Q9NR21 331 aa12.01□□□□□ -0.49
VPS33A-209ENST00000544349 FBXO9Q9UK97 447 aaPredicted RBP12.01□□□□□ -0.49
VPS33A-209ENST00000544349 SRRM5B3KS81 715 aa12□□□□□ -0.49
VPS33A-209ENST00000544349 HSD17B6O14756 317 aa12□□□□□ -0.49
VPS33A-209ENST00000544349 C1QL1O75973 258 aa12□□□□□ -0.49
VPS33A-209ENST00000544349 IGHV1-46P01743 117 aa12□□□□□ -0.49
VPS33A-209ENST00000544349 OR4A8P0C604 315 aa12□□□□□ -0.49
VPS33A-209ENST00000544349 CTRB1P17538 263 aa12□□□□□ -0.49
VPS33A-209ENST00000544349 GATA4P43694 442 aa12□□□□□ -0.49
VPS33A-209ENST00000544349 FHITP49789 147 aa12□□□□□ -0.49
VPS33A-209ENST00000544349 CDSNQ15517 529 aa12□□□□□ -0.49
VPS33A-209ENST00000544349 SMIM21Q3B7S5 101 aa12□□□□□ -0.49
VPS33A-209ENST00000544349 CTRB2Q6GPI1 263 aa12□□□□□ -0.49
VPS33A-209ENST00000544349 EIF5AL1Q6IS14 154 aaKnown RBP12□□□□□ -0.49
VPS33A-209ENST00000544349 LILRB1Q8NHL6 650 aaPredicted RBP12□□□□□ -0.49
VPS33A-209ENST00000544349 LINC01560Q8TB33 94 aa12□□□□□ -0.49
VPS33A-209ENST00000544349 PRR7Q8TB68 274 aa12□□□□□ -0.49
VPS33A-209ENST00000544349 SEC11CQ9BY50 192 aa12□□□□□ -0.49
VPS33A-209ENST00000544349 NDRG3Q9UGV2 375 aa12□□□□□ -0.49
VPS33A-209ENST00000544349 IL19Q9UHD0 177 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms