RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 INAFM2P0DMQ5 153 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 CTRB1P17538 263 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 IL3RAP26951 378 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 SSTR5P35346 364 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 IFNGR2P38484 337 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 GSSP48637 474 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 FUT6P51993 359 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 ATP1B3P54709 279 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 SMIM11AP58511 58 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 ACTBP60709 375 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 CDC42P60953 191 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 LIPEQ05469 1076 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 TMEM267Q0VDI3 215 aaPredicted RBP3.56□□□□□ -1.84
LIMS1-214ENST00000542845 TSPAN31Q12999 210 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 KLF10Q13118 480 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 ALKBH1Q13686 389 aaKnown RBP3.56□□□□□ -1.84
LIMS1-214ENST00000542845 APOFQ13790 326 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 ZNF146Q15072 292 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 UBE2V2Q15819 145 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 RPEL1Q2QD12 228 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 ACTBL2Q562R1 376 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 SPIN3Q5JUX0 258 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 FAM90A2PQ658T7 463 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 CTRB2Q6GPI1 263 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 FAHD1Q6P587 224 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 KRT74Q7RTS7 529 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 SLC16A13Q7RTY0 426 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 PPP1R27Q86WC6 154 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 Q8IYB0 196 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 GVQW1Q8N7I0 195 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 TMEM104Q8NE00 496 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 OR52L2PQ8NGH6 319 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 OR8D4Q8NGM9 314 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 C11orf45Q8TAV5 145 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.56□□□□□ -1.84
LIMS1-214ENST00000542845 RFT1Q96AA3 541 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 RDH12Q96NR8 316 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 TMEM109Q9BVC6 243 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 MROQ9BYG7 248 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 CST11Q9H112 138 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 NEK6Q9HC98 313 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 HMG20AQ9NP66 347 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 INTS9Q9NV88 658 aaKnown RBP3.56□□□□□ -1.84
LIMS1-214ENST00000542845 ARMC1Q9NVT9 282 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 FAM118AQ9NWS6 357 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 GID8Q9NWU2 228 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 MGAT4CQ9UBM8 478 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 IKZF2Q9UKS7 526 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 APLNQ9ULZ1 77 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 CDH10Q9Y6N8 788 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 V9GYS6 101 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 DYNC1H1Q14204 4646 aaKnown RBP3.56□□□□□ -1.84
LIMS1-214ENST00000542845 PKD1P98161 4303 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 FAT2Q9NYQ8 4349 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 DNAH2Q9P225 4427 aa3.56□□□□□ -1.84
LIMS1-214ENST00000542845 TRBV2A0A0J9YWF9 115 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 GAGE12BA1L429 117 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 GAGE12HA6NDE8 117 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 ACOD1A6NK06 481 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 ZAR1LA6NP61 321 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 LOC110117498-PIK3R3F6TDL0 507 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 FXYD1O00168 92 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 SLC33A1O00400 549 aaPredicted RBP3.55□□□□□ -1.84
LIMS1-214ENST00000542845 SDCBPO00560 298 aaPredicted RBP3.55□□□□□ -1.84
LIMS1-214ENST00000542845 DEFB4AO15263 64 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 SLC31A2O15432 143 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 NBR2O15453 112 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 CDK2AP2O75956 126 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 SERPINA3P01011 423 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 IL1AP01583 271 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 HLA-DRB1P01911 266 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 IL6RP08887 468 aaPredicted RBP3.55□□□□□ -1.84
LIMS1-214ENST00000542845 MRPL3P09001 348 aaKnown RBP3.55□□□□□ -1.84
LIMS1-214ENST00000542845 OCM2P0CE71 109 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 OCMP0CE72 109 aaPredicted RBP3.55□□□□□ -1.84
LIMS1-214ENST00000542845 CGB3P0DN86 165 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 CGB7P0DN87 165 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 ZNF3P17036 446 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 RRM2P31350 389 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 RBP2P50120 134 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 RIDAP52758 137 aaKnown RBP3.55□□□□□ -1.84
LIMS1-214ENST00000542845 MTCP1P56278 107 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 VSNL1P62760 191 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 MED22Q15528 200 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 ZNF829Q3KNS6 432 aaPredicted RBP3.55□□□□□ -1.84
LIMS1-214ENST00000542845 PAN3Q58A45 887 aaKnown RBP3.55□□□□□ -1.84
LIMS1-214ENST00000542845 BCL2L15Q5TBC7 163 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 LCE5AQ5TCM9 118 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 TMEM42Q69YG0 159 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 RPL13AP3Q6NVV1 102 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 PLEKHG7Q6ZR37 379 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 LFNGQ8NES3 379 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 OR5T1Q8NG75 326 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 OR9Q2Q8NGE9 314 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 OR52B4Q8NGK2 314 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 CCDC107Q8WV48 283 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 C7orf34Q96L11 122 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 ALG8Q9BVK2 526 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 PARP12Q9H0J9 701 aaKnown RBP3.55□□□□□ -1.84
LIMS1-214ENST00000542845 FBXL15Q9H469 300 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms