RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	IFITM10	A6NMD0	228 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	FAM90A22P	A8MWA6	464 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	FAM90A12P	A8MX19	464 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	FAM90A5P	A8MXJ8	464 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	FAM90A23P	A8MXZ1	464 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	GALR2	O43603	387 aa	Predicted RBP	10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	SYNGR1	O43759	233 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	PGLYRP1	O75594	196 aa	Predicted RBP	10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	TUSC2	O75896	110 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	HSPB1	P04792	205 aa	Known RBP	10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	FAM90A15P	P0C7V4	464 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	FAM90A13P	P0C7W8	464 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	FAM90A14P	P0C7W9	464 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	FAM90A24P	P0C7X0	464 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	HOXA5	P20719	270 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	WNT5A	P41221	380 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	TNFSF10	P50591	281 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	IZUMO4	Q1ZYL8	232 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	ZNF506	Q5JVG8	444 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	OR2T2	Q6IF00	324 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	C20orf204	Q6ZNR8	217 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	MDP1	Q86V88	176 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	ZDHHC23	Q8IYP9	409 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	ABHD14B	Q96IU4	210 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	ATP5S	Q99766	215 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	CELA3B	P08861	270 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	APLNR	P35414	380 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	ARR3	P36575	388 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	TLE4	Q04727	773 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	TMEM267	Q0VDI3	215 aa	Predicted RBP	10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	MYPOP	Q86VE0	399 aa	Predicted RBP	10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	THNSL2	Q86YJ6	484 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	TMEM178A	Q8NBL3	297 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	TVP23C	Q96ET8	276 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	NIPSNAP3B	Q9BS92	247 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	DOK5	Q9P104	306 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	ATP23	Q9Y6H3	246 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204	SPTBN2	O15020	2390 aa		10.64	□□□□□ -0.71
RNF4-222	ENST00000541204		A0A087WWC5	75 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	KIR2DS1	A0A191URI9	304 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	DUXB	A0A1W2PPF3	345 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	CD300LB	A8K4G0	201 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	LYZL6	O75951	148 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	KIR2DS4	P43632	304 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	RAB2A	P61019	212 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	KIR2DS1	Q14954	304 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	FBXW9	Q5XUX1	488 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	OR5D13	Q8NGL4	314 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	OR51H1	Q8NH63	302 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	HIST1H2AA	Q96QV6	131 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204		H0Y980	276 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	TRAPPC2L	H3BP13	241 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	HS3ST1	O14792	307 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	CEACAM1	P13688	526 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	CA6	P23280	308 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	TAS2R30	P59541	319 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	SRSF7	Q16629	238 aa	Known RBP eCLIP	10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	CEACAM21	Q3KPI0	293 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	SLC25A24	Q6NUK1	477 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	PIP4P1	Q86T03	277 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	C17orf78	Q8N4C9	275 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	CNEP1R1	Q8N9A8	125 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	OR1K1	Q8NGR3	316 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	TRIB1	Q96RU8	372 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	GNG13	Q9P2W3	67 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	TINAG	Q9UJW2	476 aa		10.63	□□□□□ -0.71
RNF4-222	ENST00000541204	CYB5B	O43169	146 aa		10.62	□□□□□ -0.71
RNF4-222	ENST00000541204	MMP9	P14780	707 aa		10.62	□□□□□ -0.71
RNF4-222	ENST00000541204	F2R	P25116	425 aa		10.62	□□□□□ -0.71
RNF4-222	ENST00000541204	CDX1	P47902	265 aa	Predicted RBP	10.62	□□□□□ -0.71
RNF4-222	ENST00000541204	IL24	Q13007	206 aa		10.62	□□□□□ -0.71
RNF4-222	ENST00000541204	PCSK4	Q6UW60	755 aa		10.62	□□□□□ -0.71
RNF4-222	ENST00000541204	STX12	Q86Y82	276 aa		10.62	□□□□□ -0.71
RNF4-222	ENST00000541204	LURAP1L	Q8IV03	231 aa		10.62	□□□□□ -0.71
RNF4-222	ENST00000541204	KMT2E	Q8IZD2	1858 aa		10.62	□□□□□ -0.71
RNF4-222	ENST00000541204	ZNF295-AS1	Q8N0V1	137 aa		10.62	□□□□□ -0.71
RNF4-222	ENST00000541204	GPR146	Q96CH1	333 aa		10.62	□□□□□ -0.71
RNF4-222	ENST00000541204	RBMXL1	Q96E39	390 aa	Known RBP	10.62	□□□□□ -0.71
RNF4-222	ENST00000541204	POM121	Q96HA1	1249 aa		10.62	□□□□□ -0.71
RNF4-222	ENST00000541204	ZNF292	O60281	2723 aa		10.62	□□□□□ -0.71
RNF4-222	ENST00000541204	NBEA	Q8NFP9	2946 aa		10.62	□□□□□ -0.71
RNF4-222	ENST00000541204	PSG2	P11465	335 aa		10.62	□□□□□ -0.71
RNF4-222	ENST00000541204	IDH3G	P51553	393 aa	Predicted RBP	10.62	□□□□□ -0.71
RNF4-222	ENST00000541204	ERVS71-1	P61550	626 aa		10.62	□□□□□ -0.71
RNF4-222	ENST00000541204	PYY3	Q5JQD4	70 aa		10.62	□□□□□ -0.71
RNF4-222	ENST00000541204	SPNS3	Q6ZMD2	512 aa		10.62	□□□□□ -0.71
RNF4-222	ENST00000541204	ZNF610	Q8N9Z0	462 aa		10.62	□□□□□ -0.71
RNF4-222	ENST00000541204	RDH5	Q92781	318 aa		10.62	□□□□□ -0.71
RNF4-222	ENST00000541204	RSG1	Q9BU20	258 aa		10.62	□□□□□ -0.71
RNF4-222	ENST00000541204	HBE1	P02100	147 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	MPV17L	Q2QL34	196 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	DEFB109B	Q30KR1	87 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	CDPF1	Q6NVV7	123 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	MKX	Q8IYA7	352 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	MRPL30	Q8TCC3	161 aa	Known RBP	10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	RP1L1	Q8IWN7	2480 aa	Predicted RBP	10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	ZFP92	A6NM28	416 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	ANKRD30BL	A7E2S9	258 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	HIST1H2BK	O60814	126 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	TRGC2	P03986	189 aa		10.61	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 127 ms