RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 SNAI3Q3KNW1 292 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 CTRB2Q6GPI1 263 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 P2RX4Q99571 388 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 ASCL3Q9NQ33 180 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 A0A1W2PPE3 182 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 SSTP61278 116 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 ENDOGQ14249 297 aaKnown RBP12.23□□□□□ -0.45
COLCA1-204ENST00000540738 TMEM41BQ5BJD5 291 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 SEZ6L2Q6UXD5 910 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 HOGA1Q86XE5 327 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 OR8I2Q8N0Y5 310 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 TMEM186Q96B77 213 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 CXorf58Q96LI9 332 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 CACNA1HO95180 2353 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 CORTO00230 105 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 CST4P01036 141 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 OR52B4Q8NGK2 314 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 TMEM165Q9HC07 324 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 ZMIZ1Q9ULJ6 1067 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 MTCL1Q9Y4B5 1905 aaKnown RBP12.23□□□□□ -0.45
COLCA1-204ENST00000540738 ZNF727A8MUV8 499 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 H7BYZ3 331 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 J3QR06 171 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 CHST1O43916 411 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 PF4P02776 101 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 RPUSD3Q6P087 351 aaKnown RBP12.23□□□□□ -0.45
COLCA1-204ENST00000540738 AKIP1Q9NQ31 210 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 DEPPQ9NTK1 212 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 RABAC1Q9UI14 185 aa12.23□□□□□ -0.45
COLCA1-204ENST00000540738 PDCD11Q14690 1871 aaKnown RBP12.23□□□□□ -0.45
COLCA1-204ENST00000540738 DUXBA0A1W2PPF3 345 aa12.22□□□□□ -0.45
COLCA1-204ENST00000540738 SLC25A5P05141 298 aaKnown RBP12.22□□□□□ -0.45
COLCA1-204ENST00000540738 COMPP49747 757 aaPredicted RBP12.22□□□□□ -0.45
COLCA1-204ENST00000540738 NANOS3P60323 173 aaKnown RBP12.22□□□□□ -0.45
COLCA1-204ENST00000540738 Q6ZS92 163 aa12.22□□□□□ -0.45
COLCA1-204ENST00000540738 TMEM123Q8N131 208 aa12.22□□□□□ -0.45
COLCA1-204ENST00000540738 OR2C3Q8N628 320 aa12.22□□□□□ -0.45
COLCA1-204ENST00000540738 MRPL24Q96A35 216 aaKnown RBP12.22□□□□□ -0.45
COLCA1-204ENST00000540738 SLIRPQ9GZT3 109 aaKnown RBP12.22□□□□□ -0.45
COLCA1-204ENST00000540738 PARP12Q9H0J9 701 aaKnown RBP12.22□□□□□ -0.45
COLCA1-204ENST00000540738 KCNK15Q9H427 330 aa12.22□□□□□ -0.45
COLCA1-204ENST00000540738 FAM206AQ9NX38 181 aa12.22□□□□□ -0.45
COLCA1-204ENST00000540738 METTL1Q9UBP6 276 aaKnown RBP12.22□□□□□ -0.45
COLCA1-204ENST00000540738 JPT1Q9UK76 154 aa12.22□□□□□ -0.45
COLCA1-204ENST00000540738 A0A1W2PS18 150 aa12.22□□□□□ -0.45
COLCA1-204ENST00000540738 RPS10P46783 165 aaKnown RBP12.22□□□□□ -0.45
COLCA1-204ENST00000540738 BTNL8Q6UX41 500 aa12.22□□□□□ -0.45
COLCA1-204ENST00000540738 C17orf100A8MU93 164 aa12.22□□□□□ -0.45
COLCA1-204ENST00000540738 C1QCP02747 245 aa12.22□□□□□ -0.45
COLCA1-204ENST00000540738 P2RX3P56373 397 aa12.22□□□□□ -0.45
COLCA1-204ENST00000540738 IL24Q13007 206 aa12.22□□□□□ -0.45
COLCA1-204ENST00000540738 UNQ5815/PRO19632Q6UWF5 114 aa12.22□□□□□ -0.45
COLCA1-204ENST00000540738 CENPVQ7Z7K6 275 aaPredicted RBP12.22□□□□□ -0.45
COLCA1-204ENST00000540738 BMPERQ8N8U9 685 aa12.22□□□□□ -0.45
COLCA1-204ENST00000540738 OR1B1Q8NGR6 318 aa12.22□□□□□ -0.45
COLCA1-204ENST00000540738 OR4C12Q96R67 309 aa12.22□□□□□ -0.45
COLCA1-204ENST00000540738 AICDAQ9GZX7 198 aa12.22□□□□□ -0.45
COLCA1-204ENST00000540738 SLC25A32Q9H2D1 315 aa12.22□□□□□ -0.45
COLCA1-204ENST00000540738 CD37P11049 281 aa12.22□□□□□ -0.45
COLCA1-204ENST00000540738 TMEM33P57088 247 aa12.22□□□□□ -0.45
COLCA1-204ENST00000540738 SPINK9Q5DT21 86 aa12.22□□□□□ -0.45
COLCA1-204ENST00000540738 RBPMS2Q6ZRY4 209 aaKnown RBP12.22□□□□□ -0.45
COLCA1-204ENST00000540738 BVESQ8NE79 360 aa12.22□□□□□ -0.45
COLCA1-204ENST00000540738 SLC2A9Q9NRM0 540 aa12.22□□□□□ -0.45
COLCA1-204ENST00000540738 ZFC3H1O60293 1989 aaKnown RBP12.22□□□□□ -0.45
COLCA1-204ENST00000540738 DBX1A6NMT0 343 aa12.21□□□□□ -0.45
COLCA1-204ENST00000540738 HAGHQ16775 308 aa12.21□□□□□ -0.45
COLCA1-204ENST00000540738 C11orf87Q6NUJ2 197 aa12.21□□□□□ -0.45
COLCA1-204ENST00000540738 DNM1P46Q6ZS02 220 aa12.21□□□□□ -0.45
COLCA1-204ENST00000540738 TOX4O94842 621 aa12.21□□□□□ -0.45
COLCA1-204ENST00000540738 FCGR3AP08637 254 aa12.21□□□□□ -0.45
COLCA1-204ENST00000540738 GZMKP49863 264 aa12.21□□□□□ -0.45
COLCA1-204ENST00000540738 IRF3Q14653 427 aa12.21□□□□□ -0.45
COLCA1-204ENST00000540738 OR1L1Q8NH94 360 aa12.21□□□□□ -0.45
COLCA1-204ENST00000540738 OR51B2Q9Y5P1 312 aa12.21□□□□□ -0.45
COLCA1-204ENST00000540738 PIKFYVEQ9Y2I7 2098 aa12.21□□□□□ -0.45
COLCA1-204ENST00000540738 FNDC1Q4ZHG4 1894 aaPredicted RBP12.21□□□□□ -0.45
COLCA1-204ENST00000540738 LAMTOR1Q6IAA8 161 aa12.21□□□□□ -0.45
COLCA1-204ENST00000540738 WDR89Q96FK6 387 aaPredicted RBP12.21□□□□□ -0.45
COLCA1-204ENST00000540738 C7orf69Q9H7B7 122 aa12.21□□□□□ -0.45
COLCA1-204ENST00000540738 SMLR1H3BR10 107 aa12.21□□□□□ -0.46
COLCA1-204ENST00000540738 NPY1RP25929 384 aa12.21□□□□□ -0.46
COLCA1-204ENST00000540738 OXA1LQ15070 435 aa12.21□□□□□ -0.46
COLCA1-204ENST00000540738 LY6EQ16553 131 aa12.21□□□□□ -0.46
COLCA1-204ENST00000540738 PNKDQ8N490 385 aa12.21□□□□□ -0.46
COLCA1-204ENST00000540738 DRAXINQ8NBI3 349 aaPredicted RBP12.21□□□□□ -0.46
COLCA1-204ENST00000540738 OR5P3Q8WZ94 311 aa12.21□□□□□ -0.46
COLCA1-204ENST00000540738 DLL3Q9NYJ7 618 aa12.21□□□□□ -0.46
COLCA1-204ENST00000540738 TRBV5-5A0A0J9YX44 114 aa12.21□□□□□ -0.46
COLCA1-204ENST00000540738 A0A1B0GU03 582 aa12.21□□□□□ -0.46
COLCA1-204ENST00000540738 CXorf66Q5JRM2 361 aaPredicted RBP12.21□□□□□ -0.46
COLCA1-204ENST00000540738 OR5C1Q8NGR4 320 aa12.21□□□□□ -0.46
COLCA1-204ENST00000540738 SSC4DQ8WTU2 575 aa12.21□□□□□ -0.46
COLCA1-204ENST00000540738 SERTM2A0A1B0GWG4 89 aa12.2□□□□□ -0.46
COLCA1-204ENST00000540738 BCL2L11O43521 198 aa12.2□□□□□ -0.46
COLCA1-204ENST00000540738 SPRR3Q9UBC9 169 aa12.2□□□□□ -0.46
COLCA1-204ENST00000540738 PJVKQ0ZLH3 352 aa12.2□□□□□ -0.46
COLCA1-204ENST00000540738 FAM106AQ4KMX7 169 aa12.2□□□□□ -0.46
COLCA1-204ENST00000540738 PEAR1Q5VY43 1037 aaPredicted RBP12.2□□□□□ -0.46
COLCA1-204ENST00000540738 PRR27Q6MZM9 219 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms