RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 SPAM1P38567 509 aa1.61□□□□□ -2.15
CD44-233ENST00000531141 TUFMP49411 452 aaKnown RBP1.61□□□□□ -2.15
CD44-233ENST00000531141 NUDT2P50583 147 aa1.61□□□□□ -2.15
CD44-233ENST00000531141 KLF3P57682 345 aaPredicted RBP1.61□□□□□ -2.15
CD44-233ENST00000531141 RPL10AP62906 217 aaKnown RBP1.61□□□□□ -2.15
CD44-233ENST00000531141 PMVKQ15126 192 aa1.61□□□□□ -2.15
CD44-233ENST00000531141 USF2Q15853 346 aaPredicted RBP1.61□□□□□ -2.15
CD44-233ENST00000531141 HIKESHIQ53FT3 197 aa1.61□□□□□ -2.15
CD44-233ENST00000531141 CPTPQ5TA50 214 aa1.61□□□□□ -2.15
CD44-233ENST00000531141 CLEC19AQ6UXS0 136 aa1.61□□□□□ -2.15
CD44-233ENST00000531141 FAM231DQ6ZW35 169 aa1.61□□□□□ -2.15
CD44-233ENST00000531141 SLC35D2Q76EJ3 337 aa1.61□□□□□ -2.15
CD44-233ENST00000531141 TMEM144Q7Z5S9 345 aa1.61□□□□□ -2.15
CD44-233ENST00000531141 VTCN1Q7Z7D3 282 aa1.61□□□□□ -2.15
CD44-233ENST00000531141 LINC00523Q86TU6 105 aa1.61□□□□□ -2.15
CD44-233ENST00000531141 ITPRIPQ8IWB1 547 aa1.61□□□□□ -2.15
CD44-233ENST00000531141 ZDHHC22Q8N966 263 aa1.61□□□□□ -2.15
CD44-233ENST00000531141 ITLN2Q8WWU7 325 aaPredicted RBP1.61□□□□□ -2.15
CD44-233ENST00000531141 BAALCQ8WXS3 180 aa1.61□□□□□ -2.15
CD44-233ENST00000531141 PPP1R36Q96LQ0 422 aa1.61□□□□□ -2.15
CD44-233ENST00000531141 RGCCQ9H4X1 137 aa1.61□□□□□ -2.15
CD44-233ENST00000531141 VSIRQ9H7M9 311 aa1.61□□□□□ -2.15
CD44-233ENST00000531141 MCTS1Q9ULC4 181 aaKnown RBP1.61□□□□□ -2.15
CD44-233ENST00000531141 RHBDD3Q9Y3P4 386 aa1.61□□□□□ -2.15
CD44-233ENST00000531141 BZW2Q9Y6E2 419 aaKnown RBP1.61□□□□□ -2.15
CD44-233ENST00000531141 TACC2O95359 2948 aa1.61□□□□□ -2.15
CD44-233ENST00000531141 FLNAP21333 2647 aaKnown RBP1.61□□□□□ -2.15
CD44-233ENST00000531141 RP1L1Q8IWN7 2480 aaPredicted RBP1.61□□□□□ -2.15
CD44-233ENST00000531141 CCDC168Q8NDH2 2452 aa1.61□□□□□ -2.15
CD44-233ENST00000531141 CLUHO75153 1309 aa1.61□□□□□ -2.15
CD44-233ENST00000531141 PHLPP2Q6ZVD8 1323 aa1.61□□□□□ -2.15
CD44-233ENST00000531141 TGP01266 2768 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 MAP1AP78559 2803 aaPredicted RBP1.6□□□□□ -2.15
CD44-233ENST00000531141 AKAP9Q99996 3911 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 TLN2Q9Y4G6 2542 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 BAZ2BQ9UIF8 2168 aaKnown RBP1.6□□□□□ -2.15
CD44-233ENST00000531141 GMNCA6NCL1 334 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 IGLL5B9A064 214 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 PSMD11O00231 422 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 UPK1AO00322 258 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 ENTPD6O75354 484 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 DEDDO75618 318 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 CPSF4O95639 269 aaKnown RBP1.6□□□□□ -2.15
CD44-233ENST00000531141 STAG3L2P0CL84 134 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 SRMP19623 302 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 GNRHRP30968 328 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 CSKP41240 450 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 HTR2BP41595 481 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 HNRNPA1L2Q32P51 320 aaKnown RBP1.6□□□□□ -2.15
CD44-233ENST00000531141 PDZD11Q5EBL8 140 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 KCTD16Q68DU8 428 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 PDPK2PQ6A1A2 396 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 CLEC6AQ6EIG7 209 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 ERICH5Q6P6B1 374 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 SPNS3Q6ZMD2 512 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 SYCE1Q8N0S2 351 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 ZNF555Q8NEP9 628 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 OR6K6Q8NGW6 343 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP1.6□□□□□ -2.15
CD44-233ENST00000531141 ARL5BQ96KC2 179 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 IGF2BP2-AS1Q96M15 143 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 MRPL20Q9BYC9 149 aaKnown RBP1.6□□□□□ -2.15
CD44-233ENST00000531141 CYP3A43Q9HB55 503 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 PARVGQ9HBI0 331 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 AGPAT3Q9NRZ7 376 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 CHMP5Q9NZZ3 219 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 PRO0628Q9UI54 55 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 ORC6Q9Y5N6 252 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 BSNQ9UPA5 3926 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 RYR3Q15413 4870 aa1.6□□□□□ -2.15
CD44-233ENST00000531141 MUC22E2RYF6 1773 aaPredicted RBP1.59□□□□□ -2.15
CD44-233ENST00000531141 DCHS2Q6V1P9 2916 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 GSTTP1A0A1W2PQM5 241 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 ERICH2A1L162 156 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 H3BQ85 93 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 OR2A4O95047 310 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 IGHV3-53P01767 116 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 OR5AL1P0C617 328 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 PTNP21246 168 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 CD52P31358 61 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 CFHR2P36980 270 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 SLC18A1P54219 525 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 FOXA1P55317 472 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 MLF1P58340 268 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 SLC35B1P78383 322 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 TOMM34Q15785 309 aaPredicted RBP1.59□□□□□ -2.15
CD44-233ENST00000531141 KRTAP25-1Q3LHN0 102 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 LGALSLQ3ZCW2 172 aaPredicted RBP1.59□□□□□ -2.15
CD44-233ENST00000531141 TTC32Q5I0X7 151 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 Q6ZS52 159 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 TCF24Q7RTU0 167 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 FAM58AQ8N1B3 248 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 TCAIMQ8N3R3 496 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 OR5T3Q8NGG3 340 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 OR8A1Q8NGG7 326 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 CLHC1Q8NHS4 586 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 NT5CQ8TCD5 201 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 FGF13Q92913 245 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 RBPMSQ93062 196 aaKnown RBP1.59□□□□□ -2.15
CD44-233ENST00000531141 ZNF707Q96C28 371 aaPredicted RBP1.59□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms