RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 NUDT3O95989 172 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 NGFRP08138 427 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 H2BFMP0C1H6 154 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 MED14OSP0DP75 135 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 PNMTP11086 282 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 HOXD9P28356 352 aaPredicted RBP4.99□□□□□ -1.61
CD44-225ENST00000527326 OPRM1P35372 400 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 ZNF93P35789 620 aaPredicted RBP4.99□□□□□ -1.61
CD44-225ENST00000527326 AMTP48728 403 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 SRSF6Q13247 344 aaKnown RBP4.99□□□□□ -1.61
CD44-225ENST00000527326 TESK1Q15569 626 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 ZNF585BQ52M93 769 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 MPV17L2Q567V2 206 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 GLYATL3Q5SZD4 288 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 LCN10Q6JVE6 187 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 LILRA6Q6PI73 481 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 RSPO2Q6UXX9 243 aaPredicted RBP4.99□□□□□ -1.61
CD44-225ENST00000527326 CDC20BQ86Y33 519 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 DOLPP1Q86YN1 238 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 LGI3Q8N145 548 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 OR2C3Q8N628 320 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 GVQW1Q8N7I0 195 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 OR52E5Q8NH55 327 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 PFN4Q8NHR9 129 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 KLK6Q92876 244 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 SPSB4Q96A44 273 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 ATP5SQ99766 215 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 ULBP2Q9BZM5 246 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 KCNK15Q9H427 330 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 ZNF160Q9HCG1 818 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 RNF186Q9NXI6 227 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 B4GALT6Q9UBX8 382 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 SS18L2Q9UHA2 77 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 ERG28Q9UKR5 140 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 SLC17A4Q9Y2C5 497 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 POLR1DQ9Y2S0 133 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 A0A0C4DFX4 3053 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 TTC3P53804 2025 aa4.99□□□□□ -1.61
CD44-225ENST00000527326 PLXNB2O15031 1838 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 HELZP42694 1942 aaKnown RBP4.98□□□□□ -1.61
CD44-225ENST00000527326 CCDC88CQ9P219 2028 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 IGLV3-16A0A075B6K0 115 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 A0A0J9YY10 115 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 A0A1B0GUS0 222 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 A0A1B0GX78 115 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 H0YJW9 148 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 K7ESF4 209 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 ZNF324O75467 553 aaPredicted RBP4.98□□□□□ -1.61
CD44-225ENST00000527326 LYPD3O95274 346 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 MT-ATP6P00846 226 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 TNFP01375 233 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 MT-ND6P03923 174 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 C3orf79P0CE67 100 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 ZNF728P0DKX0 622 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 HIST1H1CP16403 213 aaKnown RBP4.98□□□□□ -1.61
CD44-225ENST00000527326 AMY2BP19961 511 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 ALOX5APP20292 161 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 GRPRP30550 384 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 NTSR1P30989 418 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 CCKBRP32239 447 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 LTBRP36941 435 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 REG1BP48304 166 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 PSMB3P49720 205 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 MEF2BQ02080 365 aaPredicted RBP4.98□□□□□ -1.61
CD44-225ENST00000527326 PLCXD2Q0VAA5 305 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 ZP4Q12836 540 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 OR1Q1Q15612 314 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 HLA-DRB5Q30154 266 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 SLC25A34Q6PIV7 304 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 Q6ZSR6 202 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 BOD1L2Q8IYS8 172 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 LINC01465Q8N7H1 131 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 OR2K2Q8NGT1 345 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 OR6K6Q8NGW6 343 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 SGMS2Q8NHU3 365 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 PLPPR1Q8TBJ4 325 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 MRPL30Q8TCC3 161 aaKnown RBP4.98□□□□□ -1.61
CD44-225ENST00000527326 BLNKQ8WV28 456 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 OR5P3Q8WZ94 311 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 SPIN2AQ99865 258 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 CITED1Q99966 193 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 SPIN2BQ9BPZ2 258 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 TM2D1Q9BX74 207 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 STRADBQ9C0K7 418 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 VCX2Q9H322 139 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 C20orf141Q9NUB4 165 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 HCFC1R1Q9NWW0 138 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 ZNF391Q9UJN7 358 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 TSSC4Q9Y5U2 329 aaPredicted RBP4.98□□□□□ -1.61
CD44-225ENST00000527326 IER3IP1Q9Y5U9 82 aa4.98□□□□□ -1.61
CD44-225ENST00000527326 PLXNB3Q9ULL4 1909 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 PLXND1Q9Y4D7 1925 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 TRAV27A0A087WT01 109 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 MUC21A0A0G2JKD1 596 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 MUC21A0A140T8X8 626 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 LOC102725191A0A1B0GVB3 256 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 MYBPHLA2RUH7 354 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 C7orf71A4D174 169 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 GRIFINA4D1Z8 144 aa4.97□□□□□ -1.61
CD44-225ENST00000527326 LRP5LA4QPB2 252 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms