RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 FAM110DQ8TAY7 271 aaPredicted RBP16.43■□□□□ 0.22
VPS28-206ENST00000526734 SULT4A1Q9BR01 284 aa16.43■□□□□ 0.22
VPS28-206ENST00000526734 YTHDF1Q9BYJ9 559 aaKnown RBP16.43■□□□□ 0.22
VPS28-206ENST00000526734 RIMS4Q9H426 269 aaPredicted RBP16.43■□□□□ 0.22
VPS28-206ENST00000526734 OR2S2Q9NQN1 319 aa16.43■□□□□ 0.22
VPS28-206ENST00000526734 PDCD5O14737 125 aa16.42■□□□□ 0.22
VPS28-206ENST00000526734 OPN1MWP04001 364 aa16.42■□□□□ 0.22
VPS28-206ENST00000526734 AMY1AP04745 511 aa16.42■□□□□ 0.22
VPS28-206ENST00000526734 AMY2AP04746 511 aa16.42■□□□□ 0.22
VPS28-206ENST00000526734 OPN1MW2P0DN77 364 aa16.42■□□□□ 0.22
VPS28-206ENST00000526734 OPN1MW3P0DN78 364 aa16.42■□□□□ 0.22
VPS28-206ENST00000526734 CD28P10747 220 aa16.42■□□□□ 0.22
VPS28-206ENST00000526734 CD1BP29016 333 aa16.42■□□□□ 0.22
VPS28-206ENST00000526734 BLVRBP30043 206 aaPredicted RBP16.42■□□□□ 0.22
VPS28-206ENST00000526734 DIAPH2-AS1Q14236 149 aa16.42■□□□□ 0.22
VPS28-206ENST00000526734 MOB3BQ86TA1 216 aa16.42■□□□□ 0.22
VPS28-206ENST00000526734 OR4F17Q8NGA8 305 aa16.42■□□□□ 0.22
VPS28-206ENST00000526734 RTN4IP1Q8WWV3 396 aaPredicted RBP16.42■□□□□ 0.22
VPS28-206ENST00000526734 GALMQ96C23 342 aa16.42■□□□□ 0.22
VPS28-206ENST00000526734 OR4F4Q96R69 305 aa16.42■□□□□ 0.22
VPS28-206ENST00000526734 NDUFB11Q9NX14 153 aa16.42■□□□□ 0.22
VPS28-206ENST00000526734 ABRACLQ9P1F3 81 aa16.42■□□□□ 0.22
VPS28-206ENST00000526734 AK6Q9Y3D8 172 aaKnown RBP16.42■□□□□ 0.22
VPS28-206ENST00000526734 V9GY05 133 aa16.42■□□□□ 0.22
VPS28-206ENST00000526734 DENRO43583 198 aaKnown RBP16.41■□□□□ 0.22
VPS28-206ENST00000526734 IGKV1D-33P01593 117 aa16.41■□□□□ 0.22
VPS28-206ENST00000526734 IGKV1-33P01594 117 aa16.41■□□□□ 0.22
VPS28-206ENST00000526734 HMGN3Q15651 99 aa16.41■□□□□ 0.22
VPS28-206ENST00000526734 TMEM95Q3KNT9 176 aa16.41■□□□□ 0.22
VPS28-206ENST00000526734 FBLN7Q53RD9 439 aa16.41■□□□□ 0.22
VPS28-206ENST00000526734 CD200R1LQ6Q8B3 271 aa16.41■□□□□ 0.22
VPS28-206ENST00000526734 C6orf201Q7Z4U5 140 aa16.41■□□□□ 0.22
VPS28-206ENST00000526734 CENPVQ7Z7K6 275 aaPredicted RBP16.41■□□□□ 0.22
VPS28-206ENST00000526734 TGIF2LXQ8IUE1 241 aa16.41■□□□□ 0.22
VPS28-206ENST00000526734 FAM89BQ8N5H3 189 aa16.41■□□□□ 0.22
VPS28-206ENST00000526734 C5orf56Q8N8D9 126 aa16.41■□□□□ 0.22
VPS28-206ENST00000526734 OR5AU1Q8NGC0 362 aa16.41■□□□□ 0.22
VPS28-206ENST00000526734 OR4X2Q8NGF9 303 aa16.41■□□□□ 0.22
VPS28-206ENST00000526734 OR2T10Q8NGZ9 312 aa16.41■□□□□ 0.22
VPS28-206ENST00000526734 FCGR1BQ92637 280 aa16.41■□□□□ 0.22
VPS28-206ENST00000526734 GFI1Q99684 422 aa16.41■□□□□ 0.22
VPS28-206ENST00000526734 LPAR5Q9H1C0 372 aa16.41■□□□□ 0.22
VPS28-206ENST00000526734 PLEKHJ1Q9NW61 149 aa16.41■□□□□ 0.22
VPS28-206ENST00000526734 HSF4Q9ULV5 492 aa16.41■□□□□ 0.22
VPS28-206ENST00000526734 MGAT4AQ9UM21 535 aa16.41■□□□□ 0.22
VPS28-206ENST00000526734 MEGF8Q7Z7M0 2845 aa16.41■□□□□ 0.22
VPS28-206ENST00000526734 TRAV1-2A0A0B4J238 106 aa16.4■□□□□ 0.22
VPS28-206ENST00000526734 LANCL1O43813 399 aa16.4■□□□□ 0.22
VPS28-206ENST00000526734 YPEL1O60688 119 aa16.4■□□□□ 0.22
VPS28-206ENST00000526734 NAPSAO96009 420 aa16.4■□□□□ 0.22
VPS28-206ENST00000526734 MYL9P24844 172 aa16.4■□□□□ 0.22
VPS28-206ENST00000526734 P2RY14Q15391 338 aa16.4■□□□□ 0.22
VPS28-206ENST00000526734 SSX1Q16384 188 aa16.4■□□□□ 0.22
VPS28-206ENST00000526734 MORN2Q502X0 79 aa16.4■□□□□ 0.22
VPS28-206ENST00000526734 CT45A1Q5HYN5 189 aa16.4■□□□□ 0.22
VPS28-206ENST00000526734 OR8H1Q8NGG4 311 aa16.4■□□□□ 0.22
VPS28-206ENST00000526734 OR10V1Q8NGI7 309 aa16.4■□□□□ 0.22
VPS28-206ENST00000526734 CT45A3Q8NHU0 189 aa16.4■□□□□ 0.22
VPS28-206ENST00000526734 YPEL2Q96QA6 119 aa16.4■□□□□ 0.22
VPS28-206ENST00000526734 CITED2Q99967 270 aaPredicted RBP16.4■□□□□ 0.22
VPS28-206ENST00000526734 NICN1Q9BSH3 213 aa16.4■□□□□ 0.22
VPS28-206ENST00000526734 FAAP24Q9BTP7 215 aa16.4■□□□□ 0.22
VPS28-206ENST00000526734 CHMP1AQ9HD42 196 aaPredicted RBP16.4■□□□□ 0.22
VPS28-206ENST00000526734 TRBV6-6A0A0A6YYG2 114 aa16.39■□□□□ 0.21
VPS28-206ENST00000526734 TRDV1A0A1B0GX56 115 aa16.39■□□□□ 0.21
VPS28-206ENST00000526734 REG1BP48304 166 aa16.39■□□□□ 0.21
VPS28-206ENST00000526734 CD83Q01151 205 aa16.39■□□□□ 0.21
VPS28-206ENST00000526734 C9orf152Q5JTZ5 239 aa16.39■□□□□ 0.21
VPS28-206ENST00000526734 UBE2UQ5VVX9 321 aa16.39■□□□□ 0.21
VPS28-206ENST00000526734 ZNF880Q6PDB4 577 aa16.39■□□□□ 0.21
VPS28-206ENST00000526734 OR56B1Q8NGI3 324 aa16.39■□□□□ 0.21
VPS28-206ENST00000526734 FAM3DQ96BQ1 224 aa16.39■□□□□ 0.21
VPS28-206ENST00000526734 EAF1Q96JC9 268 aaPredicted RBP16.39■□□□□ 0.21
VPS28-206ENST00000526734 ABHD14AQ9BUJ0 271 aa16.39■□□□□ 0.21
VPS28-206ENST00000526734 KCNK15Q9H427 330 aa16.39■□□□□ 0.21
VPS28-206ENST00000526734 STEAP1Q9UHE8 339 aa16.39■□□□□ 0.21
VPS28-206ENST00000526734 SLC31A2O15432 143 aa16.38■□□□□ 0.21
VPS28-206ENST00000526734 MOSP00540 346 aa16.38■□□□□ 0.21
VPS28-206ENST00000526734 DEFA6Q01524 100 aa16.38■□□□□ 0.21
VPS28-206ENST00000526734 NSUN5P1Q3KNT7 163 aa16.38■□□□□ 0.21
VPS28-206ENST00000526734 Q8N6K4 173 aa16.38■□□□□ 0.21
VPS28-206ENST00000526734 OR51D1Q8NGF3 324 aa16.38■□□□□ 0.21
VPS28-206ENST00000526734 VWFP04275 2813 aa16.37■□□□□ 0.21
VPS28-206ENST00000526734 A0A0A6YYD4 124 aa16.37■□□□□ 0.21
VPS28-206ENST00000526734 ZNF134P52741 427 aa16.37■□□□□ 0.21
VPS28-206ENST00000526734 HNF4GQ14541 408 aa16.37■□□□□ 0.21
VPS28-206ENST00000526734 FAM53AQ6NSI3 398 aaPredicted RBP16.37■□□□□ 0.21
VPS28-206ENST00000526734 LYG1Q8N1E2 194 aa16.37■□□□□ 0.21
VPS28-206ENST00000526734 OR52L2PQ8NGH6 319 aa16.37■□□□□ 0.21
VPS28-206ENST00000526734 CHPT1Q8WUD6 406 aa16.37■□□□□ 0.21
VPS28-206ENST00000526734 C12orf4Q9NQ89 552 aa16.37■□□□□ 0.21
VPS28-206ENST00000526734 LIN7CQ9NUP9 197 aaKnown RBP16.37■□□□□ 0.21
VPS28-206ENST00000526734 TSSC4Q9Y5U2 329 aaPredicted RBP16.37■□□□□ 0.21
VPS28-206ENST00000526734 FOXI3A8MTJ6 420 aaPredicted RBP16.36■□□□□ 0.21
VPS28-206ENST00000526734 ADARB2-AS1A8MUL3 147 aa16.36■□□□□ 0.21
VPS28-206ENST00000526734 SOCS1O15524 211 aa16.36■□□□□ 0.21
VPS28-206ENST00000526734 PPP1CCP36873 323 aaKnown RBP16.36■□□□□ 0.21
VPS28-206ENST00000526734 GNMTQ14749 295 aa16.36■□□□□ 0.21
VPS28-206ENST00000526734 FAM71F2Q6NXP2 309 aa16.36■□□□□ 0.21
VPS28-206ENST00000526734 FOXRED2Q8IWF2 684 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms