RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 VN1R4Q7Z5H5 301 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 HSD17B13Q7Z5P4 300 aaPredicted RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 CAMK2N1Q7Z7J9 78 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM179BQ7Z7N9 219 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 LINC00596Q86U02 117 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 LRRC28Q86X40 367 aaPredicted RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 CALHM3Q86XJ0 350 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 CLVS1Q8IUQ0 354 aaPredicted RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZBTB8OSQ8IWT0 167 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 C11orf53Q8IXP5 236 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 UBALD2Q8IYN6 164 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM61Q8N0U2 210 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZCCHC24Q8N2G6 241 aaKnown RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 CIARTQ8N365 385 aaPredicted RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF561Q8N587 486 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 SMIM20Q8N5G0 67 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM86BQ8N661 226 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 DRAM1Q8N682 238 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 DEFB125Q8N687 156 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZFP41Q8N8Y5 198 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 GDPD1Q8N9F7 314 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZIC4Q8N9L1 334 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 LINC01555Q8NAE3 123 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 Q8NBF4 154 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 AQP11Q8NBQ7 271 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 GPR26Q8NDV2 337 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 LY6G5BQ8NDX9 201 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 NPBQ8NG41 125 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR2M7Q8NG81 312 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR4M1Q8NGD0 313 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR10AD1Q8NGE0 317 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR8B12Q8NGG6 310 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR51A2Q8NGJ7 313 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR10G4Q8NGN3 311 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR9I1Q8NGQ6 314 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR2K2Q8NGT1 345 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR13D1Q8NGV5 346 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR8S1Q8NH09 359 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR52N1Q8NH53 320 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR1L1Q8NH94 360 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNRF2Q8NHG8 242 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 RHOXF1Q8NHV9 184 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 LHFPL5Q8TAF8 219 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 GNPDA2Q8TDQ7 276 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 RXFP4Q8TDU9 374 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 C7orf33Q8WU49 177 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM151AQ8WW52 585 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ITLN1Q8WWA0 313 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 C1orf54Q8WWF1 131 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 RTN4IP1Q8WWV3 396 aaPredicted RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 SRSF12Q8WXF0 261 aaKnown RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 CCL17Q92583 94 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 FRZBQ92765 325 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM104AQ969W3 186 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 PTX4Q96A99 478 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 EXOSC8Q96B26 276 aaKnown RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM159Q96B96 161 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 GALMQ96C23 342 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ROPN1LQ96C74 230 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 GPR146Q96CH1 333 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 LRRC58Q96CX6 371 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 MS4A6EQ96DS6 147 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 MALSU1Q96EH3 234 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 NEURL3Q96EH8 262 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 PYURFQ96I23 114 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 CAPZA3Q96KX2 299 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 BMFQ96LC9 184 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 DNAJC30Q96LL9 226 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 SIGLEC12Q96PQ1 595 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 SPACA5Q96QH8 159 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR2A7Q96R45 310 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR7D2Q96RA2 312 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 PFDN5Q99471 154 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 GPER1Q99527 375 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 TBX5Q99593 518 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 TIMM17AQ99595 171 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 CDX2Q99626 313 aaPredicted RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 HSD17B10Q99714 261 aaKnown RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 LITAFQ99732 161 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 VGLL1Q99990 258 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 PRSS27Q9BQR3 290 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ANAPC13Q9BS18 74 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 RTBDNQ9BSG5 229 aaPredicted RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 MARVELD1Q9BSK0 173 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM243Q9BU79 118 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 DOHHQ9BU89 302 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 MED18Q9BUE0 208 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 PBDC1Q9BVG4 233 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 SLC25A2Q9BXI2 301 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 MS4A8Q9BY19 250 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 SAMD10Q9BYL1 202 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 TBL1XR1Q9BZK7 514 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 COMMD5Q9GZQ3 224 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 CHST6Q9GZX3 395 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 PBOV1Q9GZY1 135 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ALX4Q9H161 411 aaPredicted RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 SH3BGRL3Q9H299 93 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 SPNS1Q9H2V7 528 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 VCXQ9H320 206 aa0.43□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms