RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, human

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP54-218	ENST00000515460	IFITM5	A6NNB3	132 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460		B4DEV8	164 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	EEF1E1	O43324	174 aa	Known RBP	4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	OR1F1	O43749	312 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	PCDH7	O60245	1069 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	TXNDC12	O95881	172 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	CSN2	P05814	226 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	TRGC1	P0CF51	173 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	ESD	P10768	282 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	ACP2	P11117	423 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	ATF1	P18846	271 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	ACHE	P22303	614 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	OMG	P23515	440 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	CHAT	P28329	748 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	SRD5A2	P31213	254 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	TSFM	P43897	325 aa	Known RBP	4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	GABRA2	P47869	451 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	OR1D4	P47884	311 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	MTNR1A	P48039	350 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	OC90	Q02509	493 aa	Predicted RBP	4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	AKR1C1	Q04828	323 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	ST3GAL3	Q11203	375 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	SYPL1	Q16563	259 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	POU2AF1	Q16633	256 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	HYAL4	Q2M3T9	481 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	CEACAM21	Q3KPI0	293 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	ARHGAP11B	Q3KRB8	267 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	TTLL9	Q3SXZ7	439 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	GCSAML	Q5JQS6	135 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	TPTE2P1	Q5T6R2	138 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	HBM	Q6B0K9	141 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	WBP2NL	Q6ICG8	309 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	TEX43	Q6ZNM6	134 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460		Q6ZPB1	254 aa	Predicted RBP	4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	SHISA6	Q6ZSJ9	500 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460		Q6ZTK2	550 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	SIAH3	Q8IW03	269 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	C2orf73	Q8N5S3	287 aa	Predicted RBP	4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	AMER3	Q8N944	861 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	CHST4	Q8NCG5	386 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	WFDC11	Q8NEX6	87 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	B3GNT7	Q8NFL0	401 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	OR2T12	Q8NG77	320 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	OR11G2	Q8NGC1	345 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	OR52L1	Q8NGH7	329 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	OR10X1	Q8NGY0	326 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	OR5B3	Q8NH48	314 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	OR52P1P	Q8NH57	321 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	OR5AK2	Q8NH90	309 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	OR5K2	Q8NHB8	316 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	ZNF519	Q8TB69	540 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	TMEM239	Q8WW34	195 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	PSMF1	Q92530	271 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	DYRK2	Q92630	601 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	TMEM45B	Q96B21	275 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	CIB3	Q96Q77	187 aa	Predicted RBP	4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	IMMP2L	Q96T52	175 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	TBL1Y	Q9BQ87	522 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	POLR2J2	Q9GZM3	115 aa	Known RBP	4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	OR52D1	Q9H346	318 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	REEP1	Q9H902	201 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	PLAC1	Q9HBJ0	212 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	MEPE	Q9NQ76	525 aa	Predicted RBP	4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	CA10	Q9NS85	328 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	DCAF13	Q9NV06	445 aa	Known RBP	4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	OR6C3	Q9NZP0	311 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	UQCR10	Q9UDW1	63 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	ASF1A	Q9Y294	204 aa		4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	MRPS16	Q9Y3D3	137 aa	Known RBP	4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	AK6	Q9Y3D8	172 aa	Known RBP	4.64	□□□□□ -1.67
NUP54-218	ENST00000515460	TENM3	Q9P273	2699 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460		A0A0B4J2A0	478 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460	IGHV1-69-2	A0A0G2JMI3	117 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460		A0A1B0GX78	115 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460		G3V3Y1	287 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460	C19orf84	I3L1E1	186 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460		K7EPK0	472 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460	HS3ST1	O14792	307 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460	XRCC3	O43542	346 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460	GNG7	O60262	68 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460	OR1I1	O60431	355 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460	S1PR2	O95136	353 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460	NDUFB6	O95139	128 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460	HLA-DPB1	P04440	258 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460	SERPIND1	P05546	499 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460	FCGR3A	P08637	254 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460	OR4A8	P0C604	315 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460	PET100	P0DJ07	73 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460	FAU	P35544	74 aa	Known RBP	4.63	□□□□□ -1.67
NUP54-218	ENST00000515460	SOX3	P41225	446 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460	NSG1	P42857	185 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460	TAS2R41	P59536	307 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460	S100A10	P60903	97 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460	BTN3A2	P78410	334 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460	BTG2	P78543	158 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460	CRADD	P78560	199 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460	HMGCS1	Q01581	520 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460	EGR4	Q05215	589 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460	MFAP5	Q13361	173 aa		4.63	□□□□□ -1.67
NUP54-218	ENST00000515460	KIR2DS3	Q14952	304 aa		4.63	□□□□□ -1.67

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