RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 PRICKLE4Q2TBC4 344 aa10.36□□□□□ -0.75
LIMCH1-213ENST00000511496 Q6ZNB5 142 aa10.36□□□□□ -0.75
LIMCH1-213ENST00000511496 PRSS41Q7RTY9 318 aa10.36□□□□□ -0.75
LIMCH1-213ENST00000511496 TMEM25Q86YD3 366 aa10.36□□□□□ -0.75
LIMCH1-213ENST00000511496 OR5AS1Q8N127 324 aa10.36□□□□□ -0.75
LIMCH1-213ENST00000511496 CPT1CQ8TCG5 803 aa10.36□□□□□ -0.75
LIMCH1-213ENST00000511496 ZNF48Q96MX3 618 aaPredicted RBP10.36□□□□□ -0.75
LIMCH1-213ENST00000511496 ATP6V0BQ99437 205 aa10.36□□□□□ -0.75
LIMCH1-213ENST00000511496 DAPP1Q9UN19 280 aa10.36□□□□□ -0.75
LIMCH1-213ENST00000511496 HRKO00198 91 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 CXCL11O14625 94 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 PPIAL4GP0DN37 164 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 RPS12P25398 132 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 BAXQ07812 192 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 CNN3Q15417 329 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 LRTM2Q8N967 370 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 RCHY1Q96PM5 261 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 NECAP2Q9NVZ3 263 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 FBLN5Q9UBX5 448 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 C3orf85A0A1B0GTC6 90 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 BLACEA4D250 179 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 CEBPBP17676 345 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 YPEL3P61236 119 aaPredicted RBP10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 RPS18P62269 152 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 MLF2Q15773 248 aaPredicted RBP10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 DNM1P34Q6PK57 102 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 OVCA2Q8WZ82 227 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 NEUROG1Q92886 237 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 ZNF524Q96C55 264 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 SPIN2AQ99865 258 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 SPIN2BQ9BPZ2 258 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 WDR61Q9GZS3 305 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 MMP17Q9ULZ9 603 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 MDFIC2A0A1B0GVS7 189 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 NUDT14O95848 222 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 PNMTP11086 282 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 FBLP22087 321 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 RPL27P61353 136 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 HERV-K104P61576 105 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 ARG2P78540 354 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 VN1R4Q7Z5H5 301 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 ATG4DQ86TL0 474 aaPredicted RBP10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 SFRP2Q96HF1 295 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 DERL1Q9BUN8 251 aa10.35□□□□□ -0.75
LIMCH1-213ENST00000511496 C9orf172C9J069 976 aa10.34□□□□□ -0.75
LIMCH1-213ENST00000511496 ALG1L2C9J202 215 aa10.34□□□□□ -0.75
LIMCH1-213ENST00000511496 SLC31A1O15431 190 aa10.34□□□□□ -0.75
LIMCH1-213ENST00000511496 KRTCAP3Q53RY4 240 aa10.34□□□□□ -0.75
LIMCH1-213ENST00000511496 PHYHD1Q5SRE7 291 aa10.34□□□□□ -0.75
LIMCH1-213ENST00000511496 RPP25LQ8N5L8 163 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-213ENST00000511496 NEIL1Q96FI4 390 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-213ENST00000511496 LRRC3BQ96PB8 259 aa10.34□□□□□ -0.75
LIMCH1-213ENST00000511496 CLEC7AQ9BXN2 247 aa10.34□□□□□ -0.75
LIMCH1-213ENST00000511496 THYN1Q9P016 225 aa10.34□□□□□ -0.75
LIMCH1-213ENST00000511496 RARRES3Q9UL19 164 aa10.34□□□□□ -0.75
LIMCH1-213ENST00000511496 A0A1W2PS18 150 aa10.34□□□□□ -0.75
LIMCH1-213ENST00000511496 C8AP07357 584 aa10.34□□□□□ -0.75
LIMCH1-213ENST00000511496 IAPPP10997 89 aa10.34□□□□□ -0.75
LIMCH1-213ENST00000511496 FOXL1Q12952 345 aa10.34□□□□□ -0.75
LIMCH1-213ENST00000511496 ZNF141Q15928 474 aa10.34□□□□□ -0.75
LIMCH1-213ENST00000511496 IZUMO4Q1ZYL8 232 aa10.34□□□□□ -0.75
LIMCH1-213ENST00000511496 RD3Q7Z3Z2 195 aa10.34□□□□□ -0.75
LIMCH1-213ENST00000511496 PNPLA5Q7Z6Z6 429 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-213ENST00000511496 ZNF114Q8NC26 417 aa10.34□□□□□ -0.75
LIMCH1-213ENST00000511496 SOCS4Q8WXH5 440 aa10.34□□□□□ -0.75
LIMCH1-213ENST00000511496 OR5P3Q8WZ94 311 aa10.34□□□□□ -0.75
LIMCH1-213ENST00000511496 KLHDC7BQ96G42 594 aa10.34□□□□□ -0.75
LIMCH1-213ENST00000511496 NAA38Q9BRA0 125 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-213ENST00000511496 SLC17A3O00476 420 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 GPR75O95800 540 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 GATA2P23769 480 aaPredicted RBP10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 FOXL2P58012 376 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 ZNF467Q7Z7K2 595 aaPredicted RBP10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 OR10P1Q8NGE3 313 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 OR10V1Q8NGI7 309 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 NDUFB4O95168 129 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 CELA3BP08861 270 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 DEFA4P12838 97 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 NPPCP23582 126 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 CKS1BP61024 79 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 SLAQ13239 276 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 ZNF841Q6ZN19 808 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 NRSN1Q8IZ57 195 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 CCDC71LQ8N9Z2 235 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 PLPP3O14495 311 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 CA2P00918 260 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 IGKV1D-33P01593 117 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 IGKV1-33P01594 117 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 IGLC1P0CG04 106 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 CMPK1P30085 196 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 SELENOVP59797 346 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 RPL24P83731 157 aaKnown RBP10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 DLX2Q07687 328 aaPredicted RBP10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 GABRA6Q16445 453 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 PLCXD3Q63HM9 321 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 WDR74Q6RFH5 385 aaPredicted RBP10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 S1PR5Q9H228 398 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 FAM206AQ9NX38 181 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 TAAR3PQ9P1P4 343 aa10.33□□□□□ -0.76
LIMCH1-213ENST00000511496 NAT8BQ9UHF3 227 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms