RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 IER3P46695 156 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 ARHGDIBP52566 201 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 TMBIM6P55061 237 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 HLA-DRB3P79483 266 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 HMGN3Q15651 99 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 KRTAP24-1Q3LI83 254 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 TMEM30BQ3MIR4 351 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 FAM53AQ6NSI3 398 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 MZT2AQ6P582 158 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 LDLRAD3Q86YD5 345 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 OR52M1Q8NGK5 317 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 AP3S1Q92572 193 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 TOMM40LQ969M1 308 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 S100A16Q96FQ6 103 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 CHIAQ9BZP6 476 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 Q9N2K0 584 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 KCNK7Q9Y2U2 307 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 POMT1Q9Y6A1 747 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 TRBV6-6A0A0A6YYG2 114 aa9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 FAM25AB3EWG3 89 aa9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 FAM25CB3EWG5 89 aa9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 FAM25GB3EWG6 89 aa9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 BUB1B-PAK6H3BSN5 160 aa9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 FCGR3AP08637 254 aa9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 GSTP1P09211 210 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 IL3RAP26951 378 aa9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 MNDAP41218 407 aa9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 MADCAM1Q13477 382 aa9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 GNMTQ14749 295 aa9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 SPCS2Q15005 226 aa9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 ZNF554Q86TJ5 538 aa9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 DYNAPQ8N1N2 210 aa9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 TMEM86BQ8N661 226 aa9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 OR5R1Q8NH85 324 aa9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 NUDCD2Q8WVJ2 157 aa9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 ACOT12Q8WYK0 555 aa9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 AJUBAQ96IF1 538 aa9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 ST6GALNAC5Q9BVH7 336 aa9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 C19orf24Q9BVV8 132 aa9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 PRDM13Q9H4Q3 707 aa9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 SLC23A1Q9UHI7 598 aa9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 ZNF230Q9UIE0 474 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 JPT1Q9UK76 154 aa9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 ELF5Q9UKW6 265 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-210ENST00000509454 SMIM31A0A1B0GVY4 71 aa9.24□□□□□ -0.93
LIMCH1-210ENST00000509454 TRDCB7Z8K6 153 aa9.24□□□□□ -0.93
LIMCH1-210ENST00000509454 CLDN34H7C241 214 aa9.24□□□□□ -0.93
LIMCH1-210ENST00000509454 IGLV1-47P01700 117 aa9.24□□□□□ -0.93
LIMCH1-210ENST00000509454 RNASE1P07998 156 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-210ENST00000509454 SCTP09683 121 aa9.24□□□□□ -0.93
LIMCH1-210ENST00000509454 ZNF182P17025 639 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-210ENST00000509454 RAB13P51153 203 aa9.24□□□□□ -0.93
LIMCH1-210ENST00000509454 LOXL3P58215 753 aa9.24□□□□□ -0.93
LIMCH1-210ENST00000509454 TUSC1Q2TAM9 212 aa9.24□□□□□ -0.93
LIMCH1-210ENST00000509454 TMEM69Q5SWH9 247 aa9.24□□□□□ -0.93
LIMCH1-210ENST00000509454 LDLRAD2Q5SZI1 272 aa9.24□□□□□ -0.93
LIMCH1-210ENST00000509454 TPTE2P1Q5T6R2 138 aa9.24□□□□□ -0.93
LIMCH1-210ENST00000509454 HACD4Q5VWC8 232 aa9.24□□□□□ -0.93
LIMCH1-210ENST00000509454 ZNF880Q6PDB4 577 aa9.24□□□□□ -0.93
LIMCH1-210ENST00000509454 C16orf87Q6PH81 154 aa9.24□□□□□ -0.93
LIMCH1-210ENST00000509454 Q6ZPA2 131 aa9.24□□□□□ -0.93
LIMCH1-210ENST00000509454 FAM216AQ8WUB2 273 aa9.24□□□□□ -0.93
LIMCH1-210ENST00000509454 ZFAND2BQ8WV99 257 aa9.24□□□□□ -0.93
LIMCH1-210ENST00000509454 GCDHQ92947 438 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-210ENST00000509454 ISOC1Q96CN7 298 aa9.24□□□□□ -0.93
LIMCH1-210ENST00000509454 BCL7BQ9BQE9 202 aa9.24□□□□□ -0.93
LIMCH1-210ENST00000509454 MEGF9Q9H1U4 602 aa9.24□□□□□ -0.93
LIMCH1-210ENST00000509454 VPREB3Q9UKI3 123 aa9.24□□□□□ -0.93
LIMCH1-210ENST00000509454 A0A0A6YYH2 397 aa9.23□□□□□ -0.93
LIMCH1-210ENST00000509454 FAM181BA6NEQ2 426 aa9.23□□□□□ -0.93
LIMCH1-210ENST00000509454 A6NJ64 397 aa9.23□□□□□ -0.93
LIMCH1-210ENST00000509454 BET1O15155 118 aa9.23□□□□□ -0.93
LIMCH1-210ENST00000509454 SLC31A2O15432 143 aa9.23□□□□□ -0.93
LIMCH1-210ENST00000509454 FABP7O15540 132 aa9.23□□□□□ -0.93
LIMCH1-210ENST00000509454 HPGDSO60760 199 aa9.23□□□□□ -0.93
LIMCH1-210ENST00000509454 BRS3P32247 399 aa9.23□□□□□ -0.93
LIMCH1-210ENST00000509454 KIR2DS4P43632 304 aa9.23□□□□□ -0.93
LIMCH1-210ENST00000509454 REG1BP48304 166 aa9.23□□□□□ -0.93
LIMCH1-210ENST00000509454 HTD2P86397 168 aa9.23□□□□□ -0.93
LIMCH1-210ENST00000509454 PITPNAQ00169 270 aa9.23□□□□□ -0.93
LIMCH1-210ENST00000509454 KIR2DS1Q14954 304 aa9.23□□□□□ -0.93
LIMCH1-210ENST00000509454 PNLIPRP3Q17RR3 467 aa9.23□□□□□ -0.93
LIMCH1-210ENST00000509454 ZNF260Q3ZCT1 412 aa9.23□□□□□ -0.93
LIMCH1-210ENST00000509454 MORN2Q502X0 79 aa9.23□□□□□ -0.93
LIMCH1-210ENST00000509454 STEAP3Q658P3 488 aa9.23□□□□□ -0.93
LIMCH1-210ENST00000509454 DHRS7BQ6IAN0 325 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-210ENST00000509454 CCDC144NLQ6NUI1 221 aa9.23□□□□□ -0.93
LIMCH1-210ENST00000509454 LYG1Q8N1E2 194 aa9.23□□□□□ -0.93
LIMCH1-210ENST00000509454 OR2AK2Q8NG84 335 aa9.23□□□□□ -0.93
LIMCH1-210ENST00000509454 ABHD14AQ9BUJ0 271 aa9.23□□□□□ -0.93
LIMCH1-210ENST00000509454 ABCG5Q9H222 651 aa9.23□□□□□ -0.93
LIMCH1-210ENST00000509454 MRPS7Q9Y2R9 242 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-210ENST00000509454 ATRQ13535 2644 aa9.23□□□□□ -0.93
LIMCH1-210ENST00000509454 POM121CA8CG34 1229 aa9.22□□□□□ -0.93
LIMCH1-210ENST00000509454 H3BMQ9 156 aa9.22□□□□□ -0.93
LIMCH1-210ENST00000509454 HSD17B6O14756 317 aa9.22□□□□□ -0.93
LIMCH1-210ENST00000509454 RGS5O15539 181 aa9.22□□□□□ -0.93
LIMCH1-210ENST00000509454 GPR137BO60478 399 aa9.22□□□□□ -0.93
LIMCH1-210ENST00000509454 EIF4EP06730 217 aaKnown RBP9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 107.4 ms