RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 OR5P3Q8WZ94 311 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 LRFN3Q9BTN0 628 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 C1QTNF5Q9BXJ0 243 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 TICRRQ7Z2Z1 1910 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 TRAV38-1A0A0B4J264 116 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 MEX3AA1L020 520 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 PRR33A8MZF0 331 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 AP4M1O00189 453 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 NPBWR2P48146 333 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 ABLIM2Q6H8Q1 611 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 IFT22Q9H7X7 185 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 GP6Q9HCN6 339 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 SH2D2AQ9NP31 389 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 ARG1P05089 322 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 CRYBA1P05813 215 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 ANAPC16Q96DE5 110 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 ACY3Q96HD9 319 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 RSRP1Q9BUV0 290 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 CTDSP1Q9GZU7 261 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 WIPI2Q9Y4P8 454 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 URB1O60287 2271 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 CNTRLQ7Z7A1 2325 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 SPAARA0A1B0GVQ0 90 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 C20orf202A1L168 122 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 MPTX1A8MV57 137 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 ZNF708P17019 499 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 CNN1P51911 297 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 ETFRF1Q6IPR1 90 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 ZNF665Q9H7R5 613 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 A8MXK9 166 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 AHRRA9YTQ3 701 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 RAB4AP20338 218 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 MEOX2P50222 304 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 BATFQ16520 125 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 STUMQ69YW2 141 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 ZNF66Q6ZN08 573 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 OR10S1Q8NGN2 331 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 LILRB1Q8NHL6 650 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 ISOC2Q96AB3 205 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 MSL2Q9HCI7 577 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 A0A0G2JMM0 328 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 A0A1W2PPB8 328 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 A0A1W2PRS3 328 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 KIR3DP1A8MWS1 328 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 NAT1P18440 290 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 PAQR4Q8N4S7 273 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 WNT2BQ93097 391 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 ARHGEF17Q96PE2 2063 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 RNF222A6NCQ9 220 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 PRDX2P32119 198 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 BSXQ3C1V8 233 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 ZNF818PQ6ZRF7 136 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 OR8G5Q8NG78 346 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 LYZL4Q96KX0 146 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 ZDHHC11Q9H8X9 412 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 SLC35D1Q9NTN3 355 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 ZNF106Q9H2Y7 1883 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 SPTBP11277 2137 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 CTXND1A0A1B0GTU2 59 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 HBZP02008 142 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 DANCRP0C864 163 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 PPP1CCP36873 323 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 LY6G6FQ5SQ64 297 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 DHRS11Q6UWP2 260 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 FAM89BQ8N5H3 189 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 GALNT14Q96FL9 552 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 USB1Q9BQ65 265 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 MDC1Q14676 2089 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 FAM90A26D6RGX4 464 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 F12P00748 615 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 ERVFC1-1P60608 527 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 ZFP36L1Q07352 338 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 LSM10Q969L4 123 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 MARS2Q96GW9 593 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 TRAPPC1Q9Y5R8 145 aa9.25□□□□□ -0.93
LIMCH1-205ENST00000503057 ELOA3CA0A087WX78 387 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 HPRT1P00492 218 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 DAOP14920 347 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 FOXC1Q12948 553 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 CLEC12BQ2HXU8 276 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 CXorf66Q5JRM2 361 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 MYPOPQ86VE0 399 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 SIGLEC12Q96PQ1 595 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 ZNF355PQ9NSJ1 428 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 TUBD1Q9UJT1 453 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 LDLRAD4O15165 306 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 SPP1P10451 314 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 C1orf185Q5T7R7 199 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 SSX8Q7RTT4 187 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 VSTM2AQ8TAG5 236 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 PLSCR2Q9NRY7 297 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 EFNA2O43921 213 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 HFEQ30201 348 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 FAM166AQ6J272 317 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 GPR146Q96CH1 333 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 RNF2Q99496 336 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 PRNDQ9UKY0 176 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 IGKV1-9A0A0C4DH69 117 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 C11orf94C9JXX5 98 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 PDE6DO43924 150 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms