RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 C7orf61Q8IZ16 206 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 RPP25LQ8N5L8 163 aaKnown RBP8.27□□□□□ -1.09
SYNE1-230ENST00000495090 SPSB4Q96A44 273 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 RPUSD4Q96CM3 377 aaKnown RBP8.27□□□□□ -1.09
SYNE1-230ENST00000495090 SPACA9Q96E40 222 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-230ENST00000495090 ELOVL1Q9BW60 279 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 SF3B5Q9BWJ5 86 aaKnown RBP8.27□□□□□ -1.09
SYNE1-230ENST00000495090 MTIF3Q9H2K0 278 aaKnown RBP8.27□□□□□ -1.09
SYNE1-230ENST00000495090 FGF21Q9NSA1 209 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 PCDH15Q96QU1 1955 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 IGKV1-6A0A0C4DH72 117 aa8.26□□□□□ -1.09
SYNE1-230ENST00000495090 A0A1W2PR77 199 aa8.26□□□□□ -1.09
SYNE1-230ENST00000495090 TNFSF11O14788 317 aa8.26□□□□□ -1.09
SYNE1-230ENST00000495090 MLNRO43193 412 aa8.26□□□□□ -1.09
SYNE1-230ENST00000495090 GALR2O43603 387 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-230ENST00000495090 JMJD7P0C870 316 aa8.26□□□□□ -1.09
SYNE1-230ENST00000495090 CFHR1Q03591 330 aa8.26□□□□□ -1.09
SYNE1-230ENST00000495090 RSPO4Q2I0M5 234 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-230ENST00000495090 PCSK4Q6UW60 755 aa8.26□□□□□ -1.09
SYNE1-230ENST00000495090 LINC00596Q86U02 117 aa8.26□□□□□ -1.09
SYNE1-230ENST00000495090 CALHM1Q8IU99 346 aa8.26□□□□□ -1.09
SYNE1-230ENST00000495090 ZIC4Q8N9L1 334 aa8.26□□□□□ -1.09
SYNE1-230ENST00000495090 ZCCHC14Q8WYQ9 949 aaKnown RBP8.26□□□□□ -1.09
SYNE1-230ENST00000495090 IGFLR1Q9H665 355 aa8.26□□□□□ -1.09
SYNE1-230ENST00000495090 CHODLQ9H9P2 273 aa8.26□□□□□ -1.09
SYNE1-230ENST00000495090 MRPS18CQ9Y3D5 142 aaKnown RBP8.26□□□□□ -1.09
SYNE1-230ENST00000495090 OR2W1Q9Y3N9 320 aa8.26□□□□□ -1.09
SYNE1-230ENST00000495090 PXMP4Q9Y6I8 212 aa8.26□□□□□ -1.09
SYNE1-230ENST00000495090 SEC16AO15027 2179 aa8.26□□□□□ -1.09
SYNE1-230ENST00000495090 DNAH14Q0VDD8 3507 aa8.26□□□□□ -1.09
SYNE1-230ENST00000495090 CD300LBA8K4G0 201 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 NPIPB11E5RHQ5 1161 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 SLC33A1O00400 549 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-230ENST00000495090 TMPRSS2O15393 492 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 DNPH1O43598 174 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 TNFSF13O75888 250 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 HPRT1P00492 218 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 MMP7P09237 267 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-230ENST00000495090 EPHA8P29322 1005 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-230ENST00000495090 TNFSF10P50591 281 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 OR1D5P58170 312 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 FOXL1Q12952 345 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 PDCD1Q15116 288 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 ATP6V1FQ16864 119 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 DEFB133Q30KQ1 61 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 ZNF324BQ6AW86 544 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-230ENST00000495090 TEX43Q6ZNM6 134 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 CPT1CQ8TCG5 803 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 NEIL1Q96FI4 390 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-230ENST00000495090 WDYHV1Q96HA8 205 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 MS4A10Q96PG2 267 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 OR4C12Q96R67 309 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 MIEN1Q9BRT3 115 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 UBE2ZQ9H832 354 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-230ENST00000495090 TMEM38BQ9NVV0 291 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 CACNG5Q9UF02 275 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 TOX3O15405 576 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-230ENST00000495090 YPEL1O60688 119 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 IGKV1D-33P01593 117 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 IGKV1-33P01594 117 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 CYC1P08574 325 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 ESDP10768 282 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 PSG2P11465 335 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 IL3RAP26951 378 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 CD38P28907 300 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 PCBD1P61457 104 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 PPP1CBP62140 327 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 PAFAH1B2P68402 229 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 RTP5Q14D33 572 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 TMEM249Q2WGJ8 235 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 TMEM14EPQ6UXP3 125 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 Q6ZRM9 215 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-230ENST00000495090 PIGCQ92535 297 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 YPEL2Q96QA6 119 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 RASL10BQ96S79 203 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 GPHA2Q96T91 129 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 CHCHD2Q9Y6H1 151 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-230ENST00000495090 CHD9Q3L8U1 2897 aa8.25□□□□□ -1.09
SYNE1-230ENST00000495090 IGKV1-39P01597 117 aa8.24□□□□□ -1.09
SYNE1-230ENST00000495090 IGKV1D-39P04432 117 aa8.24□□□□□ -1.09
SYNE1-230ENST00000495090 IAPPP10997 89 aa8.24□□□□□ -1.09
SYNE1-230ENST00000495090 ZNF32P17041 273 aa8.24□□□□□ -1.09
SYNE1-230ENST00000495090 CD27P26842 260 aa8.24□□□□□ -1.09
SYNE1-230ENST00000495090 FOXL2P58012 376 aa8.24□□□□□ -1.09
SYNE1-230ENST00000495090 SELENOTP62341 195 aa8.24□□□□□ -1.09
SYNE1-230ENST00000495090 MRPS11P82912 194 aaKnown RBP8.24□□□□□ -1.09
SYNE1-230ENST00000495090 SLC38A11Q08AI6 406 aa8.24□□□□□ -1.09
SYNE1-230ENST00000495090 WDR74Q6RFH5 385 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-230ENST00000495090 OR10J5Q8NHC4 309 aa8.24□□□□□ -1.09
SYNE1-230ENST00000495090 ZNF837Q96EG3 531 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-230ENST00000495090 PRDM14Q9GZV8 571 aa8.24□□□□□ -1.09
SYNE1-230ENST00000495090 PCED1AQ9H1Q7 454 aa8.24□□□□□ -1.09
SYNE1-230ENST00000495090 GPR35Q9HC97 309 aa8.24□□□□□ -1.09
SYNE1-230ENST00000495090 TRAPPC1Q9Y5R8 145 aa8.24□□□□□ -1.09
SYNE1-230ENST00000495090 ADAMTS20P59510 1910 aa8.24□□□□□ -1.09
SYNE1-230ENST00000495090 UBE2L5PA0A1B0GUS4 154 aa8.23□□□□□ -1.09
SYNE1-230ENST00000495090 LNP1A1A4G5 178 aa8.23□□□□□ -1.09
SYNE1-230ENST00000495090 DEGS1O15121 323 aa8.23□□□□□ -1.09
SYNE1-230ENST00000495090 LINC01565O15544 149 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms