RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 MMP24Q9Y5R2 645 aa12.57□□□□□ -0.4
HDAC6-220ENST00000477528 THADAQ6YHU6 1953 aa12.57□□□□□ -0.4
HDAC6-220ENST00000477528 AHRRA9YTQ3 701 aa12.57□□□□□ -0.4
HDAC6-220ENST00000477528 GNG10P50151 68 aa12.57□□□□□ -0.4
HDAC6-220ENST00000477528 ZIC4Q8N9L1 334 aa12.57□□□□□ -0.4
HDAC6-220ENST00000477528 BORCS7Q96B45 105 aa12.57□□□□□ -0.4
HDAC6-220ENST00000477528 AQP7O14520 342 aa12.56□□□□□ -0.4
HDAC6-220ENST00000477528 FGF8P55075 233 aaPredicted RBP12.56□□□□□ -0.4
HDAC6-220ENST00000477528 RNF212Q495C1 297 aa12.56□□□□□ -0.4
HDAC6-220ENST00000477528 SPINK9Q5DT21 86 aa12.56□□□□□ -0.4
HDAC6-220ENST00000477528 CXorf66Q5JRM2 361 aaPredicted RBP12.56□□□□□ -0.4
HDAC6-220ENST00000477528 ATP1A1-AS1Q5TC04 95 aa12.56□□□□□ -0.4
HDAC6-220ENST00000477528 ZNF385CQ66K41 422 aaPredicted RBP12.56□□□□□ -0.4
HDAC6-220ENST00000477528 WNT2BQ93097 391 aa12.56□□□□□ -0.4
HDAC6-220ENST00000477528 IL22RA2Q969J5 263 aa12.56□□□□□ -0.4
HDAC6-220ENST00000477528 REPIN1Q9BWE0 567 aaKnown RBP12.56□□□□□ -0.4
HDAC6-220ENST00000477528 SLC25A22Q9H936 323 aa12.56□□□□□ -0.4
HDAC6-220ENST00000477528 MTCH1Q9NZJ7 389 aa12.56□□□□□ -0.4
HDAC6-220ENST00000477528 A0A0A6YYD4 124 aa12.56□□□□□ -0.4
HDAC6-220ENST00000477528 MGST1P10620 155 aaKnown RBP12.56□□□□□ -0.4
HDAC6-220ENST00000477528 PNRC1Q12796 327 aaPredicted RBP12.56□□□□□ -0.4
HDAC6-220ENST00000477528 TMEM241Q24JQ0 296 aa12.56□□□□□ -0.4
HDAC6-220ENST00000477528 CALHM1Q8IU99 346 aa12.56□□□□□ -0.4
HDAC6-220ENST00000477528 HEXA-AS1Q9H8Q6 139 aa12.56□□□□□ -0.4
HDAC6-220ENST00000477528 OR7C2O60412 319 aa12.56□□□□□ -0.4
HDAC6-220ENST00000477528 NQO2P16083 231 aa12.56□□□□□ -0.4
HDAC6-220ENST00000477528 GAL3ST2Q9H3Q3 398 aa12.56□□□□□ -0.4
HDAC6-220ENST00000477528 ZNF552Q9H707 407 aaPredicted RBP12.56□□□□□ -0.4
HDAC6-220ENST00000477528 LYRM2Q9NU23 88 aaPredicted RBP12.56□□□□□ -0.4
HDAC6-220ENST00000477528 A8MXK9 166 aa12.55□□□□□ -0.4
HDAC6-220ENST00000477528 G6PCP35575 357 aa12.55□□□□□ -0.4
HDAC6-220ENST00000477528 CDC34P49427 236 aaPredicted RBP12.55□□□□□ -0.4
HDAC6-220ENST00000477528 DEPPQ9NTK1 212 aa12.55□□□□□ -0.4
HDAC6-220ENST00000477528 RPH3ALQ9UNE2 315 aa12.55□□□□□ -0.4
HDAC6-220ENST00000477528 MSGN1A6NI15 193 aa12.55□□□□□ -0.4
HDAC6-220ENST00000477528 CFPP27918 469 aa12.55□□□□□ -0.4
HDAC6-220ENST00000477528 SNRPEP62304 92 aaKnown RBP12.55□□□□□ -0.4
HDAC6-220ENST00000477528 FOXC1Q12948 553 aa12.55□□□□□ -0.4
HDAC6-220ENST00000477528 DHRS11Q6UWP2 260 aa12.55□□□□□ -0.4
HDAC6-220ENST00000477528 RNF7Q9UBF6 113 aa12.55□□□□□ -0.4
HDAC6-220ENST00000477528 TP53BP1Q12888 1972 aaPredicted RBP12.55□□□□□ -0.4
HDAC6-220ENST00000477528 F12P00748 615 aaPredicted RBP12.55□□□□□ -0.4
HDAC6-220ENST00000477528 PPP1CCP36873 323 aaKnown RBP12.55□□□□□ -0.4
HDAC6-220ENST00000477528 COL10A1Q03692 680 aa12.55□□□□□ -0.4
HDAC6-220ENST00000477528 ZNF818PQ6ZRF7 136 aa12.55□□□□□ -0.4
HDAC6-220ENST00000477528 OR8G5Q8NG78 346 aa12.55□□□□□ -0.4
HDAC6-220ENST00000477528 NABP1Q96AH0 204 aa12.55□□□□□ -0.4
HDAC6-220ENST00000477528 KIAA1456Q9P272 454 aa12.55□□□□□ -0.4
HDAC6-220ENST00000477528 A0A1W2PPQ1 181 aa12.55□□□□□ -0.4
HDAC6-220ENST00000477528 SIGLEC5O15389 551 aa12.55□□□□□ -0.4
HDAC6-220ENST00000477528 IGHV3-13P01766 116 aa12.55□□□□□ -0.4
HDAC6-220ENST00000477528 IGHV3-7P01780 117 aa12.55□□□□□ -0.4
HDAC6-220ENST00000477528 MRPS11P82912 194 aaKnown RBP12.55□□□□□ -0.4
HDAC6-220ENST00000477528 TIGITQ495A1 244 aa12.55□□□□□ -0.4
HDAC6-220ENST00000477528 WIPI2Q9Y4P8 454 aa12.55□□□□□ -0.4
HDAC6-220ENST00000477528 SRSF10O75494 262 aaKnown RBP12.54□□□□□ -0.4
HDAC6-220ENST00000477528 CRYGSP22914 178 aa12.54□□□□□ -0.4
HDAC6-220ENST00000477528 PRDX2P32119 198 aa12.54□□□□□ -0.4
HDAC6-220ENST00000477528 PDZD11Q5EBL8 140 aa12.54□□□□□ -0.4
HDAC6-220ENST00000477528 PATZ1Q9HBE1 687 aaKnown RBP12.54□□□□□ -0.4
HDAC6-220ENST00000477528 LRRC3CA6NJW4 275 aa12.54□□□□□ -0.4
HDAC6-220ENST00000477528 LHX2P50458 406 aa12.54□□□□□ -0.4
HDAC6-220ENST00000477528 MED12Q93074 2177 aa12.54□□□□□ -0.4
HDAC6-220ENST00000477528 C9orf172C9J069 976 aa12.54□□□□□ -0.4
HDAC6-220ENST00000477528 CNIH1O95406 144 aa12.54□□□□□ -0.4
HDAC6-220ENST00000477528 HBZP02008 142 aa12.54□□□□□ -0.4
HDAC6-220ENST00000477528 ARG1P05089 322 aa12.54□□□□□ -0.4
HDAC6-220ENST00000477528 DEFA4P12838 97 aa12.54□□□□□ -0.4
HDAC6-220ENST00000477528 CLDN18P56856 261 aa12.54□□□□□ -0.4
HDAC6-220ENST00000477528 C4orf17Q53FE4 359 aa12.54□□□□□ -0.4
HDAC6-220ENST00000477528 NEIL1Q96FI4 390 aaPredicted RBP12.54□□□□□ -0.4
HDAC6-220ENST00000477528 TP53RKQ96S44 253 aa12.54□□□□□ -0.4
HDAC6-220ENST00000477528 RSRP1Q9BUV0 290 aa12.54□□□□□ -0.4
HDAC6-220ENST00000477528 PLSCR2Q9NRY7 297 aa12.54□□□□□ -0.4
HDAC6-220ENST00000477528 TIMM8BQ9Y5J9 83 aaPredicted RBP12.54□□□□□ -0.4
HDAC6-220ENST00000477528 C1QL1O75973 258 aa12.54□□□□□ -0.4
HDAC6-220ENST00000477528 DAOP14920 347 aa12.54□□□□□ -0.4
HDAC6-220ENST00000477528 ZNF90Q03938 601 aa12.54□□□□□ -0.4
HDAC6-220ENST00000477528 ISOC2Q96AB3 205 aa12.54□□□□□ -0.4
HDAC6-220ENST00000477528 PNRC2Q9NPJ4 139 aaKnown RBP12.54□□□□□ -0.4
HDAC6-220ENST00000477528 HEATR5AQ86XA9 2040 aa12.54□□□□□ -0.4
HDAC6-220ENST00000477528 BPIFB3P59826 476 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 RUNX1Q01196 453 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 TMEM230Q96A57 120 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 GPR146Q96CH1 333 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 TLNRD1Q9H1K6 362 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 FKBP11Q9NYL4 201 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 VAX2Q9UIW0 290 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 SOX15O60248 233 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 FABP1P07148 127 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 S100A7P31151 101 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 DEFA6Q01524 100 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 KLF14Q8TD94 323 aaPredicted RBP12.53□□□□□ -0.4
HDAC6-220ENST00000477528 GPHA2Q96T91 129 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 OPN3Q9H1Y3 402 aaPredicted RBP12.53□□□□□ -0.4
HDAC6-220ENST00000477528 FAM74A7A6NL05 159 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 MPTX1A8MV57 137 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 SCGB1D1O95968 90 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 LGALS4P56470 323 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 HIST3H3Q16695 136 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms