RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 OR52M1Q8NGK5 317 aa14.33□□□□□ -0.12
COL7A1-205ENST00000465238 OR5R1Q8NH85 324 aa14.33□□□□□ -0.12
COL7A1-205ENST00000465238 OR9G1Q8NH87 305 aa14.33□□□□□ -0.12
COL7A1-205ENST00000465238 ZNF596Q8TC21 504 aa14.33□□□□□ -0.12
COL7A1-205ENST00000465238 KCTD12Q96CX2 325 aaKnown RBP14.33□□□□□ -0.12
COL7A1-205ENST00000465238 ZNF286AQ9HBT8 521 aa14.33□□□□□ -0.12
COL7A1-205ENST00000465238 C12orf4Q9NQ89 552 aa14.33□□□□□ -0.12
COL7A1-205ENST00000465238 NOL3O60936 208 aaKnown RBP14.32□□□□□ -0.12
COL7A1-205ENST00000465238 TSPAN9O75954 239 aa14.32□□□□□ -0.12
COL7A1-205ENST00000465238 HBZP02008 142 aa14.32□□□□□ -0.12
COL7A1-205ENST00000465238 GNB3P16520 340 aa14.32□□□□□ -0.12
COL7A1-205ENST00000465238 TMBIM6P55061 237 aa14.32□□□□□ -0.12
COL7A1-205ENST00000465238 TMEM30BQ3MIR4 351 aa14.32□□□□□ -0.12
COL7A1-205ENST00000465238 MOB1BQ7L9L4 216 aa14.32□□□□□ -0.12
COL7A1-205ENST00000465238 OR1L1Q8NH94 360 aa14.32□□□□□ -0.12
COL7A1-205ENST00000465238 NDNFQ8TB73 568 aa14.32□□□□□ -0.12
COL7A1-205ENST00000465238 RAB2BQ8WUD1 216 aa14.32□□□□□ -0.12
COL7A1-205ENST00000465238 HDHD3Q9BSH5 251 aaPredicted RBP14.32□□□□□ -0.12
COL7A1-205ENST00000465238 MGAT4AQ9UM21 535 aa14.32□□□□□ -0.12
COL7A1-205ENST00000465238 TRBV6-6A0A0A6YYG2 114 aa14.31□□□□□ -0.12
COL7A1-205ENST00000465238 SERPINE3A8MV23 424 aa14.31□□□□□ -0.12
COL7A1-205ENST00000465238 F2RL2O00254 374 aa14.31□□□□□ -0.12
COL7A1-205ENST00000465238 MFNGO00587 321 aa14.31□□□□□ -0.12
COL7A1-205ENST00000465238 IGHV3-7P01780 117 aa14.31□□□□□ -0.12
COL7A1-205ENST00000465238 HTR1DP28221 377 aa14.31□□□□□ -0.12
COL7A1-205ENST00000465238 TALDO1P37837 337 aa14.31□□□□□ -0.12
COL7A1-205ENST00000465238 ARFRP1Q13795 201 aa14.31□□□□□ -0.12
COL7A1-205ENST00000465238 CDNFQ49AH0 187 aa14.31□□□□□ -0.12
COL7A1-205ENST00000465238 MINOS1Q5TGZ0 78 aa14.31□□□□□ -0.12
COL7A1-205ENST00000465238 LHFPL4Q7Z7J7 247 aa14.31□□□□□ -0.12
COL7A1-205ENST00000465238 BEND2Q8NDZ0 799 aa14.31□□□□□ -0.12
COL7A1-205ENST00000465238 C17orf50Q8WW18 174 aa14.31□□□□□ -0.12
COL7A1-205ENST00000465238 LEAP2Q969E1 77 aa14.31□□□□□ -0.12
COL7A1-205ENST00000465238 CREB3L1Q96BA8 519 aa14.31□□□□□ -0.12
COL7A1-205ENST00000465238 MALSU1Q96EH3 234 aa14.31□□□□□ -0.12
COL7A1-205ENST00000465238 BCL7BQ9BQE9 202 aa14.31□□□□□ -0.12
COL7A1-205ENST00000465238 DIABLOQ9NR28 239 aa14.31□□□□□ -0.12
COL7A1-205ENST00000465238 GFOD1Q9NXC2 390 aa14.31□□□□□ -0.12
COL7A1-205ENST00000465238 GNG12Q9UBI6 72 aa14.31□□□□□ -0.12
COL7A1-205ENST00000465238 PSG11Q9UQ72 335 aa14.31□□□□□ -0.12
COL7A1-205ENST00000465238 KCNK7Q9Y2U2 307 aa14.31□□□□□ -0.12
COL7A1-205ENST00000465238 MINOS1-NBL1R4GNA1 71 aa14.31□□□□□ -0.12
COL7A1-205ENST00000465238 IGHV3-43A0A0B4J1X8 118 aa14.3□□□□□ -0.12
COL7A1-205ENST00000465238 J3QR06 171 aa14.3□□□□□ -0.12
COL7A1-205ENST00000465238 IGHV3-43DP0DP04 118 aa14.3□□□□□ -0.12
COL7A1-205ENST00000465238 ZNF880Q6PDB4 577 aa14.3□□□□□ -0.12
COL7A1-205ENST00000465238 SAMD12Q8N8I0 201 aa14.3□□□□□ -0.12
COL7A1-205ENST00000465238 ACOT12Q8WYK0 555 aa14.3□□□□□ -0.12
COL7A1-205ENST00000465238 GALMQ96C23 342 aa14.3□□□□□ -0.12
COL7A1-205ENST00000465238 SLC25A38Q96DW6 304 aa14.3□□□□□ -0.12
COL7A1-205ENST00000465238 S100A16Q96FQ6 103 aaKnown RBP14.3□□□□□ -0.12
COL7A1-205ENST00000465238 AJUBAQ96IF1 538 aa14.3□□□□□ -0.12
COL7A1-205ENST00000465238 MEGF9Q9H1U4 602 aa14.3□□□□□ -0.12
COL7A1-205ENST00000465238 DPM3Q9P2X0 92 aa14.3□□□□□ -0.12
COL7A1-205ENST00000465238 A0A0A6YYH2 397 aa14.29□□□□□ -0.12
COL7A1-205ENST00000465238 A6NJ64 397 aa14.29□□□□□ -0.12
COL7A1-205ENST00000465238 LEUTXA8MZ59 168 aa14.29□□□□□ -0.12
COL7A1-205ENST00000465238 IGLV1-47P01700 117 aa14.29□□□□□ -0.12
COL7A1-205ENST00000465238 GSTP1P09211 210 aaKnown RBP14.29□□□□□ -0.12
COL7A1-205ENST00000465238 ZNF182P17025 639 aaPredicted RBP14.29□□□□□ -0.12
COL7A1-205ENST00000465238 CEACAM3P40198 252 aa14.29□□□□□ -0.12
COL7A1-205ENST00000465238 GNG10P50151 68 aa14.29□□□□□ -0.12
COL7A1-205ENST00000465238 LOXL3P58215 753 aa14.29□□□□□ -0.12
COL7A1-205ENST00000465238 HMGN3Q15651 99 aa14.29□□□□□ -0.12
COL7A1-205ENST00000465238 SSX2Q16385 188 aa14.29□□□□□ -0.12
COL7A1-205ENST00000465238 HLA-DRB5Q30154 266 aa14.29□□□□□ -0.12
COL7A1-205ENST00000465238 UBE2NLQ5JXB2 153 aa14.29□□□□□ -0.12
COL7A1-205ENST00000465238 UTF1Q5T230 341 aa14.29□□□□□ -0.12
COL7A1-205ENST00000465238 OR4P4Q8NGL7 312 aa14.29□□□□□ -0.12
COL7A1-205ENST00000465238 AP3S1Q92572 193 aa14.29□□□□□ -0.12
COL7A1-205ENST00000465238 ABCG5Q9H222 651 aa14.29□□□□□ -0.12
COL7A1-205ENST00000465238 MMP28Q9H239 520 aa14.29□□□□□ -0.12
COL7A1-205ENST00000465238 Q9N2K0 584 aa14.29□□□□□ -0.12
COL7A1-205ENST00000465238 OR2S2Q9NQN1 319 aa14.29□□□□□ -0.12
COL7A1-205ENST00000465238 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.29□□□□□ -0.12
COL7A1-205ENST00000465238 COMMD3Q9UBI1 195 aa14.29□□□□□ -0.12
COL7A1-205ENST00000465238 AMMECR1Q9Y4X0 333 aaPredicted RBP14.29□□□□□ -0.12
COL7A1-205ENST00000465238 HILPDAQ9Y5L2 63 aa14.29□□□□□ -0.12
COL7A1-205ENST00000465238 TRAV18A0A075B6X5 111 aa14.28□□□□□ -0.12
COL7A1-205ENST00000465238 BUB1B-PAK6H3BSN5 160 aa14.28□□□□□ -0.12
COL7A1-205ENST00000465238 SOX6P35712 828 aa14.28□□□□□ -0.12
COL7A1-205ENST00000465238 HTD2P86397 168 aa14.28□□□□□ -0.12
COL7A1-205ENST00000465238 SPCS2Q15005 226 aa14.28□□□□□ -0.12
COL7A1-205ENST00000465238 MZT2AQ6P582 158 aa14.28□□□□□ -0.12
COL7A1-205ENST00000465238 C5orf24Q7Z6I8 188 aa14.28□□□□□ -0.12
COL7A1-205ENST00000465238 IL1F10Q8WWZ1 152 aa14.28□□□□□ -0.12
COL7A1-205ENST00000465238 SSX3Q99909 188 aa14.28□□□□□ -0.12
COL7A1-205ENST00000465238 PRKDCP78527 4128 aaKnown RBP14.27□□□□□ -0.12
COL7A1-205ENST00000465238 A0A1W2PPE3 182 aa14.27□□□□□ -0.13
COL7A1-205ENST00000465238 CCDC160A6NGH7 325 aa14.27□□□□□ -0.13
COL7A1-205ENST00000465238 RGS11O94810 467 aa14.27□□□□□ -0.13
COL7A1-205ENST00000465238 PAX6P26367 422 aa14.27□□□□□ -0.13
COL7A1-205ENST00000465238 GNG2P59768 71 aa14.27□□□□□ -0.13
COL7A1-205ENST00000465238 HLA-DRB3P79483 266 aa14.27□□□□□ -0.13
COL7A1-205ENST00000465238 PITPNAQ00169 270 aa14.27□□□□□ -0.13
COL7A1-205ENST00000465238 AANATQ16613 207 aa14.27□□□□□ -0.13
COL7A1-205ENST00000465238 PNLIPRP3Q17RR3 467 aa14.27□□□□□ -0.13
COL7A1-205ENST00000465238 C2orf68Q2NKX9 166 aa14.27□□□□□ -0.13
COL7A1-205ENST00000465238 LRRC75BQ2VPJ9 315 aa14.27□□□□□ -0.13
COL7A1-205ENST00000465238 ZNF260Q3ZCT1 412 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms