RNA–Protein interactions for RNA: ENST00000461849.1

RBM39-222, Transcript of RNA binding motif protein 39, human

TSL 2

Gene RBM39, Length 861 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-222	ENST00000461849	MRPL30	Q8TCC3	161 aa	Known RBP	11.22	□□□□□ -0.61
RBM39-222	ENST00000461849	DIRAS2	Q96HU8	199 aa		11.22	□□□□□ -0.61
RBM39-222	ENST00000461849	CMSS1	Q9BQ75	279 aa	Known RBP	11.22	□□□□□ -0.61
RBM39-222	ENST00000461849	C16orf95	Q9H693	158 aa		11.22	□□□□□ -0.61
RBM39-222	ENST00000461849	RAB18	Q9NP72	206 aa		11.22	□□□□□ -0.61
RBM39-222	ENST00000461849	TAS2R3	Q9NYW6	316 aa		11.22	□□□□□ -0.61
RBM39-222	ENST00000461849	MGAT4A	Q9UM21	535 aa		11.22	□□□□□ -0.61
RBM39-222	ENST00000461849	TMEM235	A6NFC5	223 aa		11.21	□□□□□ -0.61
RBM39-222	ENST00000461849	TSPAN9	O75954	239 aa		11.21	□□□□□ -0.61
RBM39-222	ENST00000461849	HLA-DQB1	P01920	261 aa		11.21	□□□□□ -0.61
RBM39-222	ENST00000461849	RBP4	P02753	201 aa		11.21	□□□□□ -0.61
RBM39-222	ENST00000461849	GZMH	P20718	246 aa		11.21	□□□□□ -0.61
RBM39-222	ENST00000461849	DTYMK	P23919	212 aa		11.21	□□□□□ -0.61
RBM39-222	ENST00000461849	ARFRP1	Q13795	201 aa		11.21	□□□□□ -0.61
RBM39-222	ENST00000461849	LY6E	Q16553	131 aa		11.21	□□□□□ -0.61
RBM39-222	ENST00000461849	SRSF7	Q16629	238 aa	Known RBP eCLIP	11.21	□□□□□ -0.61	6e-7	■■■■□ 22.7
RBM39-222	ENST00000461849	C6orf183	Q5T699	404 aa		11.21	□□□□□ -0.61
RBM39-222	ENST00000461849	ZNF880	Q6PDB4	577 aa		11.21	□□□□□ -0.61
RBM39-222	ENST00000461849	RTN4RL2	Q86UN3	420 aa		11.21	□□□□□ -0.61
RBM39-222	ENST00000461849	TPRX1	Q8N7U7	411 aa		11.21	□□□□□ -0.61
RBM39-222	ENST00000461849	ZNF565	Q8N9K5	539 aa		11.21	□□□□□ -0.61
RBM39-222	ENST00000461849	C17orf50	Q8WW18	174 aa		11.21	□□□□□ -0.61
RBM39-222	ENST00000461849	SOST	Q9BQB4	213 aa		11.21	□□□□□ -0.61
RBM39-222	ENST00000461849	MEGF9	Q9H1U4	602 aa		11.21	□□□□□ -0.61
RBM39-222	ENST00000461849	LINC00574	Q9H8X3	128 aa		11.21	□□□□□ -0.61
RBM39-222	ENST00000461849	MBNL3	Q9NUK0	354 aa	Known RBP	11.21	□□□□□ -0.61
RBM39-222	ENST00000461849	MGAM2	Q2M2H8	2515 aa		11.21	□□□□□ -0.61
RBM39-222	ENST00000461849	ZNF729	A6NN14	1252 aa	Predicted RBP	11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	C17orf98	A8MV24	154 aa		11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	ORC5	O43913	435 aa		11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	ARG1	P05089	322 aa		11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	ZNF728	P0DKX0	622 aa		11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	CGB3	P0DN86	165 aa		11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	CGB7	P0DN87	165 aa		11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	PTBP1	P26599	531 aa	Known RBP eCLIP	11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	ETV6	P41212	452 aa		11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	DLX6	P56179	175 aa		11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	PROK1	P58294	105 aa		11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	GNG2	P59768	71 aa		11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	MRPS10	P82664	201 aa	Known RBP	11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	AANAT	Q16613	207 aa		11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	PYHIN1	Q6K0P9	492 aa		11.2	□□□□□ -0.62
RBM39-222	ENST00000461849		Q6ZS49	121 aa		11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	CCDC190	Q86UF4	302 aa		11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	IZUMO1	Q8IYV9	350 aa		11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	C11orf42	Q8N5U0	333 aa		11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	DTX3	Q8N9I9	347 aa		11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	OR13A1	Q8NGR1	328 aa		11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	CYYR1	Q96J86	154 aa		11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	ZNF714	Q96N38	554 aa		11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	GAL3ST2	Q9H3Q3	398 aa		11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	SCPEP1	Q9HB40	452 aa		11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	CHMP1A	Q9HD42	196 aa	Predicted RBP	11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	RAB9B	Q9NP90	201 aa		11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	TRAPPC2L	Q9UL33	140 aa		11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	CMYA5	Q8N3K9	4069 aa		11.2	□□□□□ -0.62
RBM39-222	ENST00000461849	KBTBD11-OT1	A0A1B0GTJ5	212 aa		11.19	□□□□□ -0.62
RBM39-222	ENST00000461849	MEX3A	A1L020	520 aa	Known RBP	11.19	□□□□□ -0.62
RBM39-222	ENST00000461849	SULT1C2	O00338	296 aa		11.19	□□□□□ -0.62
RBM39-222	ENST00000461849	FCGR3A	P08637	254 aa		11.19	□□□□□ -0.62
RBM39-222	ENST00000461849	PRSS3	P35030	304 aa		11.19	□□□□□ -0.62
RBM39-222	ENST00000461849	CBX5	P45973	191 aa		11.19	□□□□□ -0.62
RBM39-222	ENST00000461849	TMEM30B	Q3MIR4	351 aa		11.19	□□□□□ -0.62
RBM39-222	ENST00000461849	LIAT1	Q6ZQX7	453 aa		11.19	□□□□□ -0.62
RBM39-222	ENST00000461849	TRAPPC6B	Q86SZ2	158 aa		11.19	□□□□□ -0.62
RBM39-222	ENST00000461849	OR10A7	Q8NGE5	316 aa		11.19	□□□□□ -0.62
RBM39-222	ENST00000461849	OR4C13	Q8NGP0	309 aa		11.19	□□□□□ -0.62
RBM39-222	ENST00000461849	OR4K15	Q8NH41	348 aa		11.19	□□□□□ -0.62
RBM39-222	ENST00000461849	OCSTAMP	Q9BR26	566 aa		11.19	□□□□□ -0.62
RBM39-222	ENST00000461849	HDHD3	Q9BSH5	251 aa	Predicted RBP	11.19	□□□□□ -0.62
RBM39-222	ENST00000461849		Q9N2K0	584 aa		11.19	□□□□□ -0.62
RBM39-222	ENST00000461849	ABCB10	Q9NRK6	738 aa		11.19	□□□□□ -0.62
RBM39-222	ENST00000461849	ING3	Q9NXR8	418 aa		11.19	□□□□□ -0.62
RBM39-222	ENST00000461849	KCNIP1	Q9NZI2	227 aa		11.19	□□□□□ -0.62
RBM39-222	ENST00000461849	TBL2	Q9Y4P3	447 aa	Known RBP	11.19	□□□□□ -0.62
RBM39-222	ENST00000461849	FABP12	A6NFH5	140 aa		11.18	□□□□□ -0.62
RBM39-222	ENST00000461849	NPIPB11	E5RHQ5	1161 aa		11.18	□□□□□ -0.62
RBM39-222	ENST00000461849	CTDSPL	O15194	276 aa		11.18	□□□□□ -0.62
RBM39-222	ENST00000461849	SSX5	O60225	188 aa		11.18	□□□□□ -0.62
RBM39-222	ENST00000461849	LPL	P06858	475 aa		11.18	□□□□□ -0.62
RBM39-222	ENST00000461849	IGHV1-8	P0DP01	117 aa		11.18	□□□□□ -0.62
RBM39-222	ENST00000461849	PAX6	P26367	422 aa		11.18	□□□□□ -0.62
RBM39-222	ENST00000461849	GLP1R	P43220	463 aa		11.18	□□□□□ -0.62
RBM39-222	ENST00000461849	KRTAP10-3	P60369	221 aa		11.18	□□□□□ -0.62
RBM39-222	ENST00000461849	SPANXN2	Q5MJ10	180 aa		11.18	□□□□□ -0.62
RBM39-222	ENST00000461849		Q6ZPA2	131 aa		11.18	□□□□□ -0.62
RBM39-222	ENST00000461849	OR2T6	Q8NHC8	308 aa		11.18	□□□□□ -0.62
RBM39-222	ENST00000461849	MRGPRD	Q8TDS7	321 aa		11.18	□□□□□ -0.62
RBM39-222	ENST00000461849	GPX8	Q8TED1	209 aa		11.18	□□□□□ -0.62
RBM39-222	ENST00000461849	NUDCD2	Q8WVJ2	157 aa		11.18	□□□□□ -0.62
RBM39-222	ENST00000461849	CALY	Q9NYX4	217 aa		11.18	□□□□□ -0.62
RBM39-222	ENST00000461849	ELF5	Q9UKW6	265 aa	Predicted RBP	11.18	□□□□□ -0.62
RBM39-222	ENST00000461849	MRPS7	Q9Y2R9	242 aa	Known RBP	11.18	□□□□□ -0.62
RBM39-222	ENST00000461849		V9GYH0	126 aa		11.18	□□□□□ -0.62
RBM39-222	ENST00000461849	C12orf77	C9JDV5	145 aa		11.17	□□□□□ -0.62
RBM39-222	ENST00000461849	C15orf65	H3BRN8	121 aa		11.17	□□□□□ -0.62
RBM39-222	ENST00000461849	WIPF1	O43516	503 aa		11.17	□□□□□ -0.62
RBM39-222	ENST00000461849	DIRAS3	O95661	229 aa		11.17	□□□□□ -0.62
RBM39-222	ENST00000461849	RCC1	P18754	421 aa	Predicted RBP	11.17	□□□□□ -0.62
RBM39-222	ENST00000461849	KIR2DS4	P43632	304 aa		11.17	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms