RNA–Protein interactions for RNA: ENST00000460265.5

LMNB1-203, Transcript of lamin B1, humanhuman

TSL 1 (best)

Gene LMNB1, Length 3,475 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-203ENST00000460265 TDGF1P13385 188 aa13.23□□□□□ -0.29
LMNB1-203ENST00000460265 CFPP27918 469 aa13.23□□□□□ -0.29
LMNB1-203ENST00000460265 FABP6P51161 128 aa13.23□□□□□ -0.29
LMNB1-203ENST00000460265 DLK1P80370 383 aa13.23□□□□□ -0.29
LMNB1-203ENST00000460265 BATFQ16520 125 aa13.23□□□□□ -0.29
LMNB1-203ENST00000460265 ZNF705AQ6ZN79 300 aaPredicted RBP13.23□□□□□ -0.29
LMNB1-203ENST00000460265 CCDC71LQ8N9Z2 235 aa13.23□□□□□ -0.29
LMNB1-203ENST00000460265 ZNF552Q9H707 407 aaPredicted RBP13.23□□□□□ -0.29
LMNB1-203ENST00000460265 SLC2A9Q9NRM0 540 aa13.23□□□□□ -0.29
LMNB1-203ENST00000460265 C21orf140B9A014 251 aa13.23□□□□□ -0.29
LMNB1-203ENST00000460265 TGOLN2O43493 480 aa13.23□□□□□ -0.29
LMNB1-203ENST00000460265 DEFB109BQ30KR1 87 aa13.23□□□□□ -0.29
LMNB1-203ENST00000460265 NANOS1Q8WY41 292 aaKnown RBP13.23□□□□□ -0.29
LMNB1-203ENST00000460265 TRAPPC2LQ9UL33 140 aa13.23□□□□□ -0.29
LMNB1-203ENST00000460265 DSPP15924 2871 aaKnown RBP13.23□□□□□ -0.29
LMNB1-203ENST00000460265 FIGNL2A6NMB9 653 aa13.23□□□□□ -0.29
LMNB1-203ENST00000460265 CDX4O14627 284 aaPredicted RBP13.23□□□□□ -0.29
LMNB1-203ENST00000460265 LHX2P50458 406 aa13.23□□□□□ -0.29
LMNB1-203ENST00000460265 SUPT4H1P63272 117 aaKnown RBP13.23□□□□□ -0.29
LMNB1-203ENST00000460265 RIPPLY2Q5TAB7 128 aa13.23□□□□□ -0.29
LMNB1-203ENST00000460265 VHLLQ6RSH7 139 aa13.23□□□□□ -0.29
LMNB1-203ENST00000460265 ABHD5Q8WTS1 349 aa13.23□□□□□ -0.29
LMNB1-203ENST00000460265 R3HDM4Q96D70 268 aa13.23□□□□□ -0.29
LMNB1-203ENST00000460265 SPTBN1Q01082 2364 aaKnown RBP13.22□□□□□ -0.29
LMNB1-203ENST00000460265 H0YL77 283 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 NXPH2O95156 264 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 MAS1LP35410 378 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 CMTM1Q8IZ96 169 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 FAM89BQ8N5H3 189 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 GTF3C1Q12789 2109 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 DOCK11Q5JSL3 2073 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 hCG_38984A0A1B0GV85 526 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 H3BP45 60 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 SERPINE2P07093 398 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 SCTP09683 121 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 ARR3P36575 388 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 CEACAM6P40199 344 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 GFRA1P56159 465 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 HAGHQ16775 308 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 ETFRF1Q6IPR1 90 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 LGI3Q8N145 548 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 SLC35G3Q8N808 338 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 PLPPR2Q96GM1 343 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 DUSP13Q9UII6 198 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 OSGIN2Q9Y236 505 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 AKAP6Q13023 2319 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 DVL1O14640 695 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 DEGS1O15121 323 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 OTX1P32242 354 aaPredicted RBP13.22□□□□□ -0.29
LMNB1-203ENST00000460265 PPP1CCP36873 323 aaKnown RBP13.22□□□□□ -0.29
LMNB1-203ENST00000460265 CLDN18P56856 261 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 BPIFB3P59826 476 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 C10orf35Q96D05 121 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 SH2D2AQ9NP31 389 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 FBLN5Q9UBX5 448 aa13.22□□□□□ -0.29
LMNB1-203ENST00000460265 INTS1Q8N201 2190 aaKnown RBP13.21□□□□□ -0.29
LMNB1-203ENST00000460265 AGFG2O95081 481 aa13.21□□□□□ -0.29
LMNB1-203ENST00000460265 EIF3IQ13347 325 aaKnown RBP13.21□□□□□ -0.29
LMNB1-203ENST00000460265 ZNF429Q86V71 674 aa13.21□□□□□ -0.29
LMNB1-203ENST00000460265 NIPSNAP3BQ9BS92 247 aa13.21□□□□□ -0.29
LMNB1-203ENST00000460265 PITPNC1Q9UKF7 332 aa13.21□□□□□ -0.29
LMNB1-203ENST00000460265 A0A1W2PNU3 283 aaPredicted RBP13.21□□□□□ -0.29
LMNB1-203ENST00000460265 WDR1O75083 606 aa13.21□□□□□ -0.29
LMNB1-203ENST00000460265 RBM11P57052 281 aaKnown RBP13.21□□□□□ -0.29
LMNB1-203ENST00000460265 MDP1Q86V88 176 aa13.21□□□□□ -0.29
LMNB1-203ENST00000460265 PRRX2Q99811 253 aa13.21□□□□□ -0.29
LMNB1-203ENST00000460265 SH3BGRL2Q9UJC5 107 aa13.21□□□□□ -0.29
LMNB1-203ENST00000460265 MED13LQ71F56 2210 aa13.21□□□□□ -0.3
LMNB1-203ENST00000460265 ALKBH6Q3KRA9 238 aa13.21□□□□□ -0.3
LMNB1-203ENST00000460265 NCR3LG1Q68D85 454 aa13.21□□□□□ -0.3
LMNB1-203ENST00000460265 TMEM182Q6ZP80 229 aaPredicted RBP13.21□□□□□ -0.3
LMNB1-203ENST00000460265 HS3ST6Q96QI5 342 aa13.21□□□□□ -0.3
LMNB1-203ENST00000460265 CTSDP07339 412 aaPredicted RBP13.2□□□□□ -0.3
LMNB1-203ENST00000460265 DANCRP0C864 163 aa13.2□□□□□ -0.3
LMNB1-203ENST00000460265 ABLIM2Q6H8Q1 611 aa13.2□□□□□ -0.3
LMNB1-203ENST00000460265 MRPL41Q8IXM3 137 aaKnown RBP13.2□□□□□ -0.3
LMNB1-203ENST00000460265 C1orf87Q8N0U7 546 aa13.2□□□□□ -0.3
LMNB1-203ENST00000460265 NAA60Q9H7X0 242 aa13.2□□□□□ -0.3
LMNB1-203ENST00000460265 RNF150Q9ULK6 438 aa13.2□□□□□ -0.3
LMNB1-203ENST00000460265 PPP1R3CQ9UQK1 317 aa13.2□□□□□ -0.3
LMNB1-203ENST00000460265 RPL36A-HNRNPH2H7BZ11 118 aa13.2□□□□□ -0.3
LMNB1-203ENST00000460265 CDIPTO14735 213 aa13.2□□□□□ -0.3
LMNB1-203ENST00000460265 ST8SIA3O43173 380 aa13.2□□□□□ -0.3
LMNB1-203ENST00000460265 CST7O76096 145 aa13.2□□□□□ -0.3
LMNB1-203ENST00000460265 PPYP01298 95 aa13.2□□□□□ -0.3
LMNB1-203ENST00000460265 RPLP1P05386 114 aaKnown RBP13.2□□□□□ -0.3
LMNB1-203ENST00000460265 TBC1D28Q2M2D7 210 aa13.2□□□□□ -0.3
LMNB1-203ENST00000460265 OR13D1Q8NGV5 346 aa13.2□□□□□ -0.3
LMNB1-203ENST00000460265 ADGRG7Q96K78 797 aa13.2□□□□□ -0.3
LMNB1-203ENST00000460265 OR2J1Q9GZK6 312 aa13.2□□□□□ -0.3
LMNB1-203ENST00000460265 TCF21O43680 179 aa13.19□□□□□ -0.3
LMNB1-203ENST00000460265 SCGB1D1O95968 90 aa13.19□□□□□ -0.3
LMNB1-203ENST00000460265 ALDH3B1P43353 468 aa13.19□□□□□ -0.3
LMNB1-203ENST00000460265 TDGF1P3P51864 188 aa13.19□□□□□ -0.3
LMNB1-203ENST00000460265 ERRFI1Q9UJM3 462 aaPredicted RBP13.19□□□□□ -0.3
LMNB1-203ENST00000460265 BOD1L1Q8NFC6 3051 aa13.19□□□□□ -0.3
LMNB1-203ENST00000460265 SSSCA1O60232 199 aa13.19□□□□□ -0.3
LMNB1-203ENST00000460265 GAPDHP04406 335 aaKnown RBP13.19□□□□□ -0.3
LMNB1-203ENST00000460265 RNPS1Q15287 305 aaKnown RBP13.19□□□□□ -0.3
LMNB1-203ENST00000460265 FAM185AQ8N0U4 392 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms