RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 PDLIM3Q53GG5 364 aaPredicted RBP12.35□□□□□ -0.43
LIMS1-210ENST00000449684 SIGIRRQ6IA17 410 aa12.35□□□□□ -0.43
LIMS1-210ENST00000449684 TGIF2LXQ8IUE1 241 aa12.35□□□□□ -0.43
LIMS1-210ENST00000449684 GAPTQ8N292 157 aa12.35□□□□□ -0.43
LIMS1-210ENST00000449684 OR2T10Q8NGZ9 312 aa12.35□□□□□ -0.43
LIMS1-210ENST00000449684 SETD6Q8TBK2 473 aa12.35□□□□□ -0.43
LIMS1-210ENST00000449684 GALMQ96C23 342 aa12.35□□□□□ -0.43
LIMS1-210ENST00000449684 FAAP24Q9BTP7 215 aa12.35□□□□□ -0.43
LIMS1-210ENST00000449684 PLEKHJ1Q9NW61 149 aa12.35□□□□□ -0.43
LIMS1-210ENST00000449684 ABRACLQ9P1F3 81 aa12.35□□□□□ -0.43
LIMS1-210ENST00000449684 RAB26Q9ULW5 256 aa12.35□□□□□ -0.43
LIMS1-210ENST00000449684 AK6Q9Y3D8 172 aaKnown RBP12.35□□□□□ -0.43
LIMS1-210ENST00000449684 LRRC42Q9Y546 428 aa12.35□□□□□ -0.43
LIMS1-210ENST00000449684 SLC22A1O15245 554 aa12.34□□□□□ -0.43
LIMS1-210ENST00000449684 FGF16O43320 207 aa12.34□□□□□ -0.43
LIMS1-210ENST00000449684 TXNL1O43396 289 aa12.34□□□□□ -0.43
LIMS1-210ENST00000449684 RGS11O94810 467 aa12.34□□□□□ -0.43
LIMS1-210ENST00000449684 BLVRBP30043 206 aaPredicted RBP12.34□□□□□ -0.43
LIMS1-210ENST00000449684 PSMD7P51665 324 aa12.34□□□□□ -0.43
LIMS1-210ENST00000449684 P2RY14Q15391 338 aa12.34□□□□□ -0.43
LIMS1-210ENST00000449684 RAB11BQ15907 218 aa12.34□□□□□ -0.43
LIMS1-210ENST00000449684 FAM53AQ6NSI3 398 aaPredicted RBP12.34□□□□□ -0.43
LIMS1-210ENST00000449684 TMEM91Q6ZNR0 172 aa12.34□□□□□ -0.43
LIMS1-210ENST00000449684 SLC25A48Q6ZT89 311 aaKnown RBP12.34□□□□□ -0.43
LIMS1-210ENST00000449684 C6orf201Q7Z4U5 140 aa12.34□□□□□ -0.43
LIMS1-210ENST00000449684 ZNF554Q86TJ5 538 aa12.34□□□□□ -0.43
LIMS1-210ENST00000449684 C5orf56Q8N8D9 126 aa12.34□□□□□ -0.43
LIMS1-210ENST00000449684 MRPL30Q8TCC3 161 aaKnown RBP12.34□□□□□ -0.43
LIMS1-210ENST00000449684 WIPF2Q8TF74 440 aaPredicted RBP12.34□□□□□ -0.43
LIMS1-210ENST00000449684 RTN4IP1Q8WWV3 396 aaPredicted RBP12.34□□□□□ -0.43
LIMS1-210ENST00000449684 SULT4A1Q9BR01 284 aa12.34□□□□□ -0.43
LIMS1-210ENST00000449684 ACOT13Q9NPJ3 140 aa12.34□□□□□ -0.43
LIMS1-210ENST00000449684 MBNL3Q9NUK0 354 aaKnown RBP12.34□□□□□ -0.43
LIMS1-210ENST00000449684 TSSC4Q9Y5U2 329 aaPredicted RBP12.34□□□□□ -0.43
LIMS1-210ENST00000449684 PSMB11A5LHX3 300 aa12.33□□□□□ -0.44
LIMS1-210ENST00000449684 SERPINE3A8MV23 424 aa12.33□□□□□ -0.44
LIMS1-210ENST00000449684 SLC31A2O15432 143 aa12.33□□□□□ -0.44
LIMS1-210ENST00000449684 ATP6V1G2O95670 118 aa12.33□□□□□ -0.44
LIMS1-210ENST00000449684 CHATP28329 748 aa12.33□□□□□ -0.44
LIMS1-210ENST00000449684 CD83Q01151 205 aa12.33□□□□□ -0.44
LIMS1-210ENST00000449684 MORN2Q502X0 79 aa12.33□□□□□ -0.44
LIMS1-210ENST00000449684 CT45A1Q5HYN5 189 aa12.33□□□□□ -0.44
LIMS1-210ENST00000449684 STEAP3Q658P3 488 aa12.33□□□□□ -0.44
LIMS1-210ENST00000449684 ZNF367Q7RTV3 350 aa12.33□□□□□ -0.44
LIMS1-210ENST00000449684 SLC35E3Q7Z769 313 aa12.33□□□□□ -0.44
LIMS1-210ENST00000449684 FOXRED2Q8IWF2 684 aa12.33□□□□□ -0.44
LIMS1-210ENST00000449684 OR52L2PQ8NGH6 319 aa12.33□□□□□ -0.44
LIMS1-210ENST00000449684 CT45A3Q8NHU0 189 aa12.33□□□□□ -0.44
LIMS1-210ENST00000449684 IL1F10Q8WWZ1 152 aa12.33□□□□□ -0.44
LIMS1-210ENST00000449684 EAF1Q96JC9 268 aaPredicted RBP12.33□□□□□ -0.44
LIMS1-210ENST00000449684 NICN1Q9BSH3 213 aa12.33□□□□□ -0.44
LIMS1-210ENST00000449684 TM2D1Q9BX74 207 aa12.33□□□□□ -0.44
LIMS1-210ENST00000449684 KCNK15Q9H427 330 aa12.33□□□□□ -0.44
LIMS1-210ENST00000449684 Q9H521 79 aa12.33□□□□□ -0.44
LIMS1-210ENST00000449684 STEAP1Q9UHE8 339 aa12.33□□□□□ -0.44
LIMS1-210ENST00000449684 JPT1Q9UK76 154 aa12.33□□□□□ -0.44
LIMS1-210ENST00000449684 TMEM14DPA8MWL7 114 aa12.32□□□□□ -0.44
LIMS1-210ENST00000449684 SLC17A2O00624 439 aa12.32□□□□□ -0.44
LIMS1-210ENST00000449684 MOSP00540 346 aa12.32□□□□□ -0.44
LIMS1-210ENST00000449684 PF4P02776 101 aa12.32□□□□□ -0.44
LIMS1-210ENST00000449684 CD1BP29016 333 aa12.32□□□□□ -0.44
LIMS1-210ENST00000449684 SLC35B1P78383 322 aa12.32□□□□□ -0.44
LIMS1-210ENST00000449684 FABP5Q01469 135 aa12.32□□□□□ -0.44
LIMS1-210ENST00000449684 UNC119Q13432 240 aa12.32□□□□□ -0.44
LIMS1-210ENST00000449684 TBCEQ15813 527 aaPredicted RBP12.32□□□□□ -0.44
LIMS1-210ENST00000449684 OR2W3Q7Z3T1 314 aa12.32□□□□□ -0.44
LIMS1-210ENST00000449684 IZUMO1Q8IYV9 350 aa12.32□□□□□ -0.44
LIMS1-210ENST00000449684 CHPT1Q8WUD6 406 aa12.32□□□□□ -0.44
LIMS1-210ENST00000449684 RASL11BQ9BPW5 248 aa12.32□□□□□ -0.44
LIMS1-210ENST00000449684 ABHD14AQ9BUJ0 271 aa12.32□□□□□ -0.44
LIMS1-210ENST00000449684 G3V4G9 280 aa12.31□□□□□ -0.44
LIMS1-210ENST00000449684 PDCD5O14737 125 aa12.31□□□□□ -0.44
LIMS1-210ENST00000449684 CD33P20138 364 aa12.31□□□□□ -0.44
LIMS1-210ENST00000449684 PPP1CCP36873 323 aaKnown RBP12.31□□□□□ -0.44
LIMS1-210ENST00000449684 ZNF134P52741 427 aa12.31□□□□□ -0.44
LIMS1-210ENST00000449684 HTD2P86397 168 aa12.31□□□□□ -0.44
LIMS1-210ENST00000449684 EBI3Q14213 229 aa12.31□□□□□ -0.44
LIMS1-210ENST00000449684 SVOPQ8N4V2 548 aa12.31□□□□□ -0.44
LIMS1-210ENST00000449684 ZNF439Q8NDP4 499 aa12.31□□□□□ -0.44
LIMS1-210ENST00000449684 OR2AK2Q8NG84 335 aa12.31□□□□□ -0.44
LIMS1-210ENST00000449684 OR51D1Q8NGF3 324 aa12.31□□□□□ -0.44
LIMS1-210ENST00000449684 ST6GALNAC6Q969X2 333 aa12.31□□□□□ -0.44
LIMS1-210ENST00000449684 RIMS4Q9H426 269 aaPredicted RBP12.31□□□□□ -0.44
LIMS1-210ENST00000449684 V9GY05 133 aa12.31□□□□□ -0.44
LIMS1-210ENST00000449684 YPEL1O60688 119 aa12.3□□□□□ -0.44
LIMS1-210ENST00000449684 MYL9P24844 172 aa12.3□□□□□ -0.44
LIMS1-210ENST00000449684 VEGFCP49767 419 aa12.3□□□□□ -0.44
LIMS1-210ENST00000449684 CLDN12P56749 244 aa12.3□□□□□ -0.44
LIMS1-210ENST00000449684 MRPS15P82914 257 aaKnown RBP12.3□□□□□ -0.44
LIMS1-210ENST00000449684 QRFPP83859 136 aa12.3□□□□□ -0.44
LIMS1-210ENST00000449684 GNMTQ14749 295 aa12.3□□□□□ -0.44
LIMS1-210ENST00000449684 C10orf99Q6UWK7 81 aa12.3□□□□□ -0.44
LIMS1-210ENST00000449684 MOB1BQ7L9L4 216 aa12.3□□□□□ -0.44
LIMS1-210ENST00000449684 ZNF329Q86UD4 541 aa12.3□□□□□ -0.44
LIMS1-210ENST00000449684 OR8H1Q8NGG4 311 aa12.3□□□□□ -0.44
LIMS1-210ENST00000449684 FAM3DQ96BQ1 224 aa12.3□□□□□ -0.44
LIMS1-210ENST00000449684 CYYR1Q96J86 154 aa12.3□□□□□ -0.44
LIMS1-210ENST00000449684 NOL4LQ96MY1 436 aaPredicted RBP12.3□□□□□ -0.44
LIMS1-210ENST00000449684 YPEL2Q96QA6 119 aa12.3□□□□□ -0.44
LIMS1-210ENST00000449684 LPAR5Q9H1C0 372 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms