RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 TMEM208Q9BTX3 173 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 MRPL37Q9BZE1 423 aaKnown RBP6.78□□□□□ -1.32
NEDD9-204ENST00000448183 OR51M1Q9H341 326 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 WNT16Q9UBV4 365 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 CLN8Q9UBY8 286 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 SCN3AQ9NY46 2000 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 A0A0U1RQV5 110 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 J3QR06 171 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 DNASE2O00115 360 aaPredicted RBP6.78□□□□□ -1.32
NEDD9-204ENST00000448183 KLK10O43240 276 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 C1QL1O75973 258 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 DXOO77932 396 aaKnown RBP6.78□□□□□ -1.32
NEDD9-204ENST00000448183 C1QCP02747 245 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 ASAH2BP0C7U1 165 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 ZNF385CQ66K41 422 aaPredicted RBP6.78□□□□□ -1.32
NEDD9-204ENST00000448183 MOGAT3Q86VF5 341 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 RFLNBQ8N5W9 214 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 TMEM52Q8NDY8 209 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 SMIM12Q96EX1 92 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 TLNRD1Q9H1K6 362 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 NPVFQ9HCQ7 196 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 RNF7Q9UBF6 113 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 TMEM210A6NLX4 147 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 MPDU1O75352 247 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 HIST1H1BP16401 226 aaKnown RBP6.78□□□□□ -1.32
NEDD9-204ENST00000448183 ZNF137PP52743 207 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 ZP4Q12836 540 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 WDR74Q6RFH5 385 aaPredicted RBP6.78□□□□□ -1.32
NEDD9-204ENST00000448183 NFAM1Q8NET5 270 aaPredicted RBP6.78□□□□□ -1.32
NEDD9-204ENST00000448183 MYOZ3Q8TDC0 251 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 SNRNP40Q96DI7 357 aaKnown RBP6.78□□□□□ -1.32
NEDD9-204ENST00000448183 SLC25A38Q96DW6 304 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 ABHD14BQ96IU4 210 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 CDK5RAP2Q96SN8 1893 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 COL25A1Q9BXS0 654 aaPredicted RBP6.78□□□□□ -1.32
NEDD9-204ENST00000448183 TMEM140Q9NV12 185 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 C1RLQ9NZP8 487 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 CDC42EP3Q9UKI2 254 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 DTX4Q9Y2E6 619 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 ZFP30Q9Y2G7 519 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 DSPPQ9NZW4 1301 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 AHCTF1Q8WYP5 2266 aa6.78□□□□□ -1.32
NEDD9-204ENST00000448183 A8MWL6 223 aa6.77□□□□□ -1.32
NEDD9-204ENST00000448183 KLF7O75840 302 aaPredicted RBP6.77□□□□□ -1.32
NEDD9-204ENST00000448183 EML2O95834 649 aa6.77□□□□□ -1.32
NEDD9-204ENST00000448183 CCL3P10147 92 aa6.77□□□□□ -1.32
NEDD9-204ENST00000448183 ZFP36L2P47974 494 aaKnown RBP6.77□□□□□ -1.32
NEDD9-204ENST00000448183 OR4B1Q8NGF8 309 aa6.77□□□□□ -1.32
NEDD9-204ENST00000448183 ABHD3Q8WU67 409 aa6.77□□□□□ -1.32
NEDD9-204ENST00000448183 ASCL3Q9NQ33 180 aa6.77□□□□□ -1.32
NEDD9-204ENST00000448183 ECM29Q5VYK3 1845 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 MPLP40238 635 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 P2RY4P51582 365 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 ROM1Q03395 351 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 C1orf100Q5SVJ3 147 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 FAM27BQ5VT28 67 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 C9orf40Q8IXQ3 194 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 AQP10Q96PS8 301 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 RSG1Q9BU20 258 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 ZNF665Q9H7R5 613 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 TCFL5Q9UL49 500 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 CCDC88CQ9P219 2028 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 COL5A3P25940 1745 aaPredicted RBP6.77□□□□□ -1.33
NEDD9-204ENST00000448183 H0Y980 276 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 SIGLEC5O15389 551 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 SIGLEC14Q08ET2 396 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 SFTPA1Q8IWL2 248 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 LINC00518Q8N0U6 118 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 OR11H4Q8NGC9 324 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 OR1P1Q8NH06 330 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 TMEM222Q9H0R3 208 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 NPDC1Q9NQX5 325 aaPredicted RBP6.77□□□□□ -1.33
NEDD9-204ENST00000448183 FOXS1O43638 330 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 NDUFB4O95168 129 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 LIFP15018 202 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 DDTP30046 118 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 PPP1CCP36873 323 aaKnown RBP6.77□□□□□ -1.33
NEDD9-204ENST00000448183 WNT5AP41221 380 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 BHLHA15Q7RTS1 189 aaPredicted RBP6.77□□□□□ -1.33
NEDD9-204ENST00000448183 ZNF784Q8NCA9 323 aaPredicted RBP6.77□□□□□ -1.33
NEDD9-204ENST00000448183 SLC25A40Q8TBP6 338 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 FAM222BQ8WU58 562 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 PAXXQ9BUH6 204 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 COA4Q9NYJ1 87 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 NPTNQ9Y639 398 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 CKAP5Q14008 2032 aa6.77□□□□□ -1.33
NEDD9-204ENST00000448183 CXorf65A6NEN9 183 aa6.76□□□□□ -1.33
NEDD9-204ENST00000448183 GCM2O75603 506 aaPredicted RBP6.76□□□□□ -1.33
NEDD9-204ENST00000448183 HPRT1P00492 218 aa6.76□□□□□ -1.33
NEDD9-204ENST00000448183 AESQ08117 197 aa6.76□□□□□ -1.33
NEDD9-204ENST00000448183 PMCHL1Q16048 86 aa6.76□□□□□ -1.33
NEDD9-204ENST00000448183 CT55Q8WUE5 264 aa6.76□□□□□ -1.33
NEDD9-204ENST00000448183 MS4A3Q96HJ5 214 aa6.76□□□□□ -1.33
NEDD9-204ENST00000448183 ZNF385AQ96PM9 386 aaKnown RBP6.76□□□□□ -1.33
NEDD9-204ENST00000448183 P2RX4Q99571 388 aa6.76□□□□□ -1.33
NEDD9-204ENST00000448183 PCGF1Q9BSM1 259 aa6.76□□□□□ -1.33
NEDD9-204ENST00000448183 RAB1BQ9H0U4 201 aa6.76□□□□□ -1.33
NEDD9-204ENST00000448183 SAP30LQ9HAJ7 183 aa6.76□□□□□ -1.33
NEDD9-204ENST00000448183 INSIG2Q9Y5U4 225 aa6.76□□□□□ -1.33
NEDD9-204ENST00000448183 PXMP4Q9Y6I8 212 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms