RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 NQO2P16083 231 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 RCC1P18754 421 aaPredicted RBP6.34□□□□□ -1.39
SYNE1-213ENST00000448038 CXCL3P19876 107 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 F2RP25116 425 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 ZNF154Q13106 437 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 LYZL2Q7Z4W2 148 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 C1QL2Q7Z5L3 287 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 Q9N2K0 584 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 MED9Q9NWA0 146 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 C1RLQ9NZP8 487 aa6.34□□□□□ -1.39
SYNE1-213ENST00000448038 SYNGR2O43760 224 aa6.34□□□□□ -1.4
SYNE1-213ENST00000448038 MGST1P10620 155 aaKnown RBP6.34□□□□□ -1.4
SYNE1-213ENST00000448038 PSG2P11465 335 aa6.34□□□□□ -1.4
SYNE1-213ENST00000448038 TMEM11P17152 192 aa6.34□□□□□ -1.4
SYNE1-213ENST00000448038 Q56UQ5 140 aa6.34□□□□□ -1.4
SYNE1-213ENST00000448038 ZNF787Q6DD87 383 aa6.34□□□□□ -1.4
SYNE1-213ENST00000448038 PIP4P1Q86T03 277 aa6.34□□□□□ -1.4
SYNE1-213ENST00000448038 ZNF596Q8TC21 504 aa6.34□□□□□ -1.4
SYNE1-213ENST00000448038 SSX3Q99909 188 aa6.34□□□□□ -1.4
SYNE1-213ENST00000448038 DHRS9Q9BPW9 319 aa6.34□□□□□ -1.4
SYNE1-213ENST00000448038 SEBOXQ9HB31 216 aaPredicted RBP6.34□□□□□ -1.4
SYNE1-213ENST00000448038 INTS1Q8N201 2190 aaKnown RBP6.34□□□□□ -1.4
SYNE1-213ENST00000448038 ROS1P08922 2347 aa6.34□□□□□ -1.4
SYNE1-213ENST00000448038 NKX2-6A6NCS4 301 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 C1orf196B1AJZ1 125 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 CLEC3BP05452 202 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 G6PCP35575 357 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 RAB5CP51148 216 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 FOXG1P55316 489 aaPredicted RBP6.33□□□□□ -1.4
SYNE1-213ENST00000448038 RPS11P62280 158 aaKnown RBP eCLIP6.33□□□□□ -1.4
SYNE1-213ENST00000448038 ACSM6Q6P461 480 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 Q6ZS92 163 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 OR1L1Q8NH94 360 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 ABHD14BQ96IU4 210 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 RHOFQ9HBH0 211 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 SNRNP200O75643 2136 aaKnown RBP6.33□□□□□ -1.4
SYNE1-213ENST00000448038 MDFIC2A0A1B0GVS7 189 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 WNT9BO14905 357 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 RRASP10301 218 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 SCMH1Q96GD3 660 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 HIF1ANQ9NWT6 349 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 MTCH1Q9NZJ7 389 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 TIMP3P35625 211 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 CSN1S1P47710 185 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 H3F3AP84243 136 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 TCF15Q12870 199 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 ETFRF1Q6IPR1 90 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 DOLPP1Q86YN1 238 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 MITD1Q8WV92 249 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 NMES1Q9C002 83 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 ZDHHC11Q9H8X9 412 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 ZNF407Q9C0G0 2248 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 DENND4CQ5VZ89 1909 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 CDRT15L2A8MXV6 281 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 PRR32B1ATL7 298 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 CHST1O43916 411 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 ARG1P05089 322 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 CD37P11049 281 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 P2RX3P56373 397 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 ADIRFQ15847 76 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 KCNIP4Q6PIL6 250 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 FGFBP3Q8TAT2 258 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 ASCL3Q9NQ33 180 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 CALYQ9NYX4 217 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 THYN1Q9P016 225 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 PCP4L1A6NKN8 68 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 RHBDL1O75783 438 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 OR10J4P0C629 311 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 TDGF1P13385 188 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 CD200P41217 278 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 GLIPR1P48060 266 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 EFNB1P98172 346 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 FAM209AQ5JX71 171 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 CALHM1Q8IU99 346 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 RASL11BQ9BPW5 248 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 MIOXQ9UGB7 285 aa6.33□□□□□ -1.4
SYNE1-213ENST00000448038 B3GALT5-AS1P59052 145 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 UBE2G1P62253 170 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 CCDC144NLQ6NUI1 221 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 OR4F5Q8NH21 305 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 OR4F4Q96R69 305 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 ALX4Q9H161 411 aaPredicted RBP6.32□□□□□ -1.4
SYNE1-213ENST00000448038 UMAD1C9J7I0 102 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 ZNF561Q8N587 486 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 OR11H7Q8NGC8 314 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 CCL19Q99731 98 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 PIMREGQ9BSJ6 248 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 BDP1A6H8Y1 2624 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 CRYM-AS1A6NIL9 109 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 IQCF6A8MYZ5 107 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 J3QRE1 110 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 CDS2O95674 445 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 INHBBP09529 407 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 KIR2DL2P43627 348 aaPredicted RBP6.32□□□□□ -1.4
SYNE1-213ENST00000448038 UNC119Q13432 240 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 ZNRF1Q8ND25 227 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 DTD1Q8TEA8 209 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 C14orf79Q96F83 325 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 FBXL17Q9UF56 701 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 PRNDQ9UKY0 176 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms