RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 SNRNP70P08621 437 aaKnown RBP12.15□□□□□ -0.46
LIMS3-201ENST00000437679 VDAC2P45880 294 aaPredicted RBP12.15□□□□□ -0.46
LIMS3-201ENST00000437679 ZNF816Q0VGE8 651 aaPredicted RBP12.15□□□□□ -0.46
LIMS3-201ENST00000437679 HES1Q14469 280 aa12.15□□□□□ -0.46
LIMS3-201ENST00000437679 C2orf76Q3KRA6 126 aa12.15□□□□□ -0.46
LIMS3-201ENST00000437679 HES5Q5TA89 166 aa12.15□□□□□ -0.46
LIMS3-201ENST00000437679 ZNF773Q6PK81 442 aa12.15□□□□□ -0.46
LIMS3-201ENST00000437679 CYYR1Q96J86 154 aa12.15□□□□□ -0.46
LIMS3-201ENST00000437679 OR2S2Q9NQN1 319 aa12.15□□□□□ -0.46
LIMS3-201ENST00000437679 SOCS1O15524 211 aa12.14□□□□□ -0.47
LIMS3-201ENST00000437679 RAB3BP20337 219 aa12.14□□□□□ -0.47
LIMS3-201ENST00000437679 C2orf68Q2NKX9 166 aa12.14□□□□□ -0.47
LIMS3-201ENST00000437679 C22orf42Q6IC83 251 aa12.14□□□□□ -0.47
LIMS3-201ENST00000437679 FAM53AQ6NSI3 398 aaPredicted RBP12.14□□□□□ -0.47
LIMS3-201ENST00000437679 Q6ZS46 218 aa12.14□□□□□ -0.47
LIMS3-201ENST00000437679 SLC25A48Q6ZT89 311 aaKnown RBP12.14□□□□□ -0.47
LIMS3-201ENST00000437679 MOB3BQ86TA1 216 aa12.14□□□□□ -0.47
LIMS3-201ENST00000437679 FAM89BQ8N5H3 189 aa12.14□□□□□ -0.47
LIMS3-201ENST00000437679 C11orf44Q8N8P7 122 aa12.14□□□□□ -0.47
LIMS3-201ENST00000437679 SETD6Q8TBK2 473 aa12.14□□□□□ -0.47
LIMS3-201ENST00000437679 CFHR4Q92496 578 aa12.14□□□□□ -0.47
LIMS3-201ENST00000437679 RIMS4Q9H426 269 aaPredicted RBP12.14□□□□□ -0.47
LIMS3-201ENST00000437679 ABRACLQ9P1F3 81 aa12.14□□□□□ -0.47
LIMS3-201ENST00000437679 JPT1Q9UK76 154 aa12.14□□□□□ -0.47
LIMS3-201ENST00000437679 MOB4Q9Y3A3 225 aa12.14□□□□□ -0.47
LIMS3-201ENST00000437679 IGHV1-3A0A0C4DH29 117 aa12.13□□□□□ -0.47
LIMS3-201ENST00000437679 SLC31A2O15432 143 aa12.13□□□□□ -0.47
LIMS3-201ENST00000437679 RGS11O94810 467 aa12.13□□□□□ -0.47
LIMS3-201ENST00000437679 TMEM11P17152 192 aa12.13□□□□□ -0.47
LIMS3-201ENST00000437679 REG1BP48304 166 aa12.13□□□□□ -0.47
LIMS3-201ENST00000437679 VEGFCP49767 419 aa12.13□□□□□ -0.47
LIMS3-201ENST00000437679 OR10A3P58181 314 aa12.13□□□□□ -0.47
LIMS3-201ENST00000437679 HTD2P86397 168 aa12.13□□□□□ -0.47
LIMS3-201ENST00000437679 ABCA11PQ4W5N1 156 aa12.13□□□□□ -0.47
LIMS3-201ENST00000437679 MORN2Q502X0 79 aa12.13□□□□□ -0.47
LIMS3-201ENST00000437679 FBLN7Q53RD9 439 aa12.13□□□□□ -0.47
LIMS3-201ENST00000437679 CT45A1Q5HYN5 189 aa12.13□□□□□ -0.47
LIMS3-201ENST00000437679 STEAP3Q658P3 488 aa12.13□□□□□ -0.47
LIMS3-201ENST00000437679 MOB1BQ7L9L4 216 aa12.13□□□□□ -0.47
LIMS3-201ENST00000437679 ZNF439Q8NDP4 499 aa12.13□□□□□ -0.47
LIMS3-201ENST00000437679 OR52L2PQ8NGH6 319 aa12.13□□□□□ -0.47
LIMS3-201ENST00000437679 OR56B1Q8NGI3 324 aa12.13□□□□□ -0.47
LIMS3-201ENST00000437679 CT45A3Q8NHU0 189 aa12.13□□□□□ -0.47
LIMS3-201ENST00000437679 GALMQ96C23 342 aa12.13□□□□□ -0.47
LIMS3-201ENST00000437679 MMP27Q9H306 513 aa12.13□□□□□ -0.47
LIMS3-201ENST00000437679 RAB22AQ9UL26 194 aa12.13□□□□□ -0.47
LIMS3-201ENST00000437679 HSF4Q9ULV5 492 aa12.13□□□□□ -0.47
LIMS3-201ENST00000437679 STUB1Q9UNE7 303 aa12.13□□□□□ -0.47
LIMS3-201ENST00000437679 TMEM272A0A1B0GTI8 110 aa12.12□□□□□ -0.47
LIMS3-201ENST00000437679 SHISA3A0PJX4 238 aa12.12□□□□□ -0.47
LIMS3-201ENST00000437679 IFITM5A6NNB3 132 aa12.12□□□□□ -0.47
LIMS3-201ENST00000437679 TXNL1O43396 289 aa12.12□□□□□ -0.47
LIMS3-201ENST00000437679 FBXO24O75426 580 aa12.12□□□□□ -0.47
LIMS3-201ENST00000437679 NAPSAO96009 420 aa12.12□□□□□ -0.47
LIMS3-201ENST00000437679 IGKV1D-33P01593 117 aa12.12□□□□□ -0.47
LIMS3-201ENST00000437679 IGKV1-33P01594 117 aa12.12□□□□□ -0.47
LIMS3-201ENST00000437679 CSF1P09603 554 aa12.12□□□□□ -0.47
LIMS3-201ENST00000437679 ZNF134P52741 427 aa12.12□□□□□ -0.47
LIMS3-201ENST00000437679 HNF4GQ14541 408 aa12.12□□□□□ -0.47
LIMS3-201ENST00000437679 HMGN3Q15651 99 aa12.12□□□□□ -0.47
LIMS3-201ENST00000437679 TMEM95Q3KNT9 176 aa12.12□□□□□ -0.47
LIMS3-201ENST00000437679 KCTD21Q4G0X4 260 aa12.12□□□□□ -0.47
LIMS3-201ENST00000437679 C9orf152Q5JTZ5 239 aa12.12□□□□□ -0.47
LIMS3-201ENST00000437679 RTN4IP1Q8WWV3 396 aaPredicted RBP12.12□□□□□ -0.47
LIMS3-201ENST00000437679 ST6GALNAC6Q969X2 333 aa12.12□□□□□ -0.47
LIMS3-201ENST00000437679 ARHGAP5-AS1Q96IT6 56 aa12.12□□□□□ -0.47
LIMS3-201ENST00000437679 WNT10AQ9GZT5 417 aa12.12□□□□□ -0.47
LIMS3-201ENST00000437679 AK3Q9UIJ7 227 aa12.12□□□□□ -0.47
LIMS3-201ENST00000437679 SSR3Q9UNL2 185 aa12.12□□□□□ -0.47
LIMS3-201ENST00000437679 TRBV6-6A0A0A6YYG2 114 aa12.11□□□□□ -0.47
LIMS3-201ENST00000437679 FOXI3A8MTJ6 420 aaPredicted RBP12.11□□□□□ -0.47
LIMS3-201ENST00000437679 LDLRAD4O15165 306 aa12.11□□□□□ -0.47
LIMS3-201ENST00000437679 YPEL1O60688 119 aa12.11□□□□□ -0.47
LIMS3-201ENST00000437679 AMY1AP04745 511 aa12.11□□□□□ -0.47
LIMS3-201ENST00000437679 AMY2AP04746 511 aa12.11□□□□□ -0.47
LIMS3-201ENST00000437679 FGF9P31371 208 aaPredicted RBP12.11□□□□□ -0.47
LIMS3-201ENST00000437679 PPP1CCP36873 323 aaKnown RBP12.11□□□□□ -0.47
LIMS3-201ENST00000437679 ZNF137PP52743 207 aa12.11□□□□□ -0.47
LIMS3-201ENST00000437679 TMEM50BP56557 158 aa12.11□□□□□ -0.47
LIMS3-201ENST00000437679 GNMTQ14749 295 aa12.11□□□□□ -0.47
LIMS3-201ENST00000437679 ZNF880Q6PDB4 577 aa12.11□□□□□ -0.47
LIMS3-201ENST00000437679 C5orf24Q7Z6I8 188 aa12.11□□□□□ -0.47
LIMS3-201ENST00000437679 TGIF2LXQ8IUE1 241 aa12.11□□□□□ -0.47
LIMS3-201ENST00000437679 LYG1Q8N1E2 194 aa12.11□□□□□ -0.47
LIMS3-201ENST00000437679 IL1F10Q8WWZ1 152 aa12.11□□□□□ -0.47
LIMS3-201ENST00000437679 YPEL2Q96QA6 119 aa12.11□□□□□ -0.47
LIMS3-201ENST00000437679 ABHD14AQ9BUJ0 271 aa12.11□□□□□ -0.47
LIMS3-201ENST00000437679 PECRQ9BY49 303 aa12.11□□□□□ -0.47
LIMS3-201ENST00000437679 TXNL4BQ9NX01 149 aaKnown RBP12.11□□□□□ -0.47
LIMS3-201ENST00000437679 MGAT4AQ9UM21 535 aa12.11□□□□□ -0.47
LIMS3-201ENST00000437679 IGHV3-72A0A0B4J1Y9 119 aa12.1□□□□□ -0.47
LIMS3-201ENST00000437679 SH2D7A6NKC9 451 aaPredicted RBP12.1□□□□□ -0.47
LIMS3-201ENST00000437679 FGF16O43320 207 aa12.1□□□□□ -0.47
LIMS3-201ENST00000437679 TSPAN15O95858 294 aa12.1□□□□□ -0.47
LIMS3-201ENST00000437679 EBI3Q14213 229 aa12.1□□□□□ -0.47
LIMS3-201ENST00000437679 LY6G6FQ5SQ64 297 aa12.1□□□□□ -0.47
LIMS3-201ENST00000437679 CENPVQ7Z7K6 275 aaPredicted RBP12.1□□□□□ -0.47
LIMS3-201ENST00000437679 IZUMO1Q8IYV9 350 aa12.1□□□□□ -0.47
LIMS3-201ENST00000437679 OR2AK2Q8NG84 335 aa12.1□□□□□ -0.47
LIMS3-201ENST00000437679 OR2T10Q8NGZ9 312 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms