RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 IGSF23A1L1A6 192 aa12.65□□□□□ -0.38
PTPRU-204ENST00000428026 PITX3O75364 302 aa12.65□□□□□ -0.38
PTPRU-204ENST00000428026 COL19A1Q14993 1142 aa12.65□□□□□ -0.38
PTPRU-204ENST00000428026 ZNF738Q8NE65 137 aa12.65□□□□□ -0.38
PTPRU-204ENST00000428026 RBM14Q96PK6 669 aaKnown RBP12.65□□□□□ -0.38
PTPRU-204ENST00000428026 SOSTQ9BQB4 213 aa12.65□□□□□ -0.38
PTPRU-204ENST00000428026 MRPL37Q9BZE1 423 aaKnown RBP12.65□□□□□ -0.38
PTPRU-204ENST00000428026 MRPS18AQ9NVS2 196 aaKnown RBP12.65□□□□□ -0.38
PTPRU-204ENST00000428026 RIGQ13278 110 aa12.65□□□□□ -0.38
PTPRU-204ENST00000428026 RNPS1Q15287 305 aaKnown RBP12.65□□□□□ -0.38
PTPRU-204ENST00000428026 HOGA1Q86XE5 327 aa12.65□□□□□ -0.38
PTPRU-204ENST00000428026 EIF4E3Q8N5X7 224 aaKnown RBP12.65□□□□□ -0.38
PTPRU-204ENST00000428026 SLC26A1Q9H2B4 701 aa12.65□□□□□ -0.38
PTPRU-204ENST00000428026 HSPB8Q9UJY1 196 aa12.65□□□□□ -0.38
PTPRU-204ENST00000428026 CYB5R3P00387 301 aaPredicted RBP12.64□□□□□ -0.39
PTPRU-204ENST00000428026 DGAT2L7PQ6IED9 249 aa12.64□□□□□ -0.39
PTPRU-204ENST00000428026 OR4X1Q8NH49 305 aa12.64□□□□□ -0.39
PTPRU-204ENST00000428026 MS4A18H0YCH9 400 aa12.64□□□□□ -0.39
PTPRU-204ENST00000428026 GFRA3O60609 400 aa12.64□□□□□ -0.39
PTPRU-204ENST00000428026 TNFAIP6P98066 277 aaPredicted RBP12.64□□□□□ -0.39
PTPRU-204ENST00000428026 MS4A18Q3C1V0 323 aa12.64□□□□□ -0.39
PTPRU-204ENST00000428026 ACER2Q5QJU3 275 aa12.64□□□□□ -0.39
PTPRU-204ENST00000428026 ZNF519Q8TB69 540 aa12.64□□□□□ -0.39
PTPRU-204ENST00000428026 ALX4Q9H161 411 aaPredicted RBP12.64□□□□□ -0.39
PTPRU-204ENST00000428026 OR2W1Q9Y3N9 320 aa12.64□□□□□ -0.39
PTPRU-204ENST00000428026 TPRP12270 2363 aaKnown RBP12.64□□□□□ -0.39
PTPRU-204ENST00000428026 CXorf1O96002 111 aa12.64□□□□□ -0.39
PTPRU-204ENST00000428026 HAND1O96004 215 aa12.64□□□□□ -0.39
PTPRU-204ENST00000428026 BRS3P32247 399 aa12.64□□□□□ -0.39
PTPRU-204ENST00000428026 LTBRP36941 435 aa12.64□□□□□ -0.39
PTPRU-204ENST00000428026 LILRB1Q8NHL6 650 aaPredicted RBP12.64□□□□□ -0.39
PTPRU-204ENST00000428026 A0A1W2PP11 408 aa12.64□□□□□ -0.39
PTPRU-204ENST00000428026 CRYABP02511 175 aaKnown RBP12.64□□□□□ -0.39
PTPRU-204ENST00000428026 MFAP2P55001 183 aa12.64□□□□□ -0.39
PTPRU-204ENST00000428026 NAAAQ02083 359 aa12.64□□□□□ -0.39
PTPRU-204ENST00000428026 RARRES2Q99969 163 aa12.64□□□□□ -0.39
PTPRU-204ENST00000428026 ATG101Q9BSB4 218 aa12.64□□□□□ -0.39
PTPRU-204ENST00000428026 TMEM208Q9BTX3 173 aa12.64□□□□□ -0.39
PTPRU-204ENST00000428026 CBLN4Q9NTU7 201 aa12.64□□□□□ -0.39
PTPRU-204ENST00000428026 IGHV3-21A0A0B4J1V1 117 aa12.64□□□□□ -0.39
PTPRU-204ENST00000428026 IGHV5-10-1A0A0J9YXX1 117 aa12.64□□□□□ -0.39
PTPRU-204ENST00000428026 C3AR1Q16581 482 aa12.64□□□□□ -0.39
PTPRU-204ENST00000428026 OR52L2PQ8NGH6 319 aa12.64□□□□□ -0.39
PTPRU-204ENST00000428026 RNF133Q8WVZ7 376 aa12.64□□□□□ -0.39
PTPRU-204ENST00000428026 MPC1Q9Y5U8 109 aa12.64□□□□□ -0.39
PTPRU-204ENST00000428026 CA2P00918 260 aa12.63□□□□□ -0.39
PTPRU-204ENST00000428026 FOXO1Q12778 655 aa12.63□□□□□ -0.39
PTPRU-204ENST00000428026 OR1P1Q8NH06 330 aa12.63□□□□□ -0.39
PTPRU-204ENST00000428026 ZNF665Q9H7R5 613 aa12.63□□□□□ -0.39
PTPRU-204ENST00000428026 ZFP64Q9NPA5 681 aa12.63□□□□□ -0.39
PTPRU-204ENST00000428026 A0A1B0GU03 582 aa12.63□□□□□ -0.39
PTPRU-204ENST00000428026 OOEPA6NGQ2 149 aa12.63□□□□□ -0.39
PTPRU-204ENST00000428026 ISLRO14498 428 aa12.63□□□□□ -0.39
PTPRU-204ENST00000428026 NDUFB4O95168 129 aa12.63□□□□□ -0.39
PTPRU-204ENST00000428026 SOD3P08294 240 aa12.63□□□□□ -0.39
PTPRU-204ENST00000428026 CEBPDP49716 269 aaPredicted RBP12.63□□□□□ -0.39
PTPRU-204ENST00000428026 TINAGQ9UJW2 476 aa12.63□□□□□ -0.39
PTPRU-204ENST00000428026 ZFC3H1O60293 1989 aaKnown RBP12.63□□□□□ -0.39
PTPRU-204ENST00000428026 hADV38S2A0JD32 116 aa12.63□□□□□ -0.39
PTPRU-204ENST00000428026 LINC01387J3KSC0 135 aa12.63□□□□□ -0.39
PTPRU-204ENST00000428026 DNASE2O00115 360 aaPredicted RBP12.63□□□□□ -0.39
PTPRU-204ENST00000428026 PCP4P48539 62 aa12.63□□□□□ -0.39
PTPRU-204ENST00000428026 C10orf113Q5VZT2 155 aa12.63□□□□□ -0.39
PTPRU-204ENST00000428026 ZNF841Q6ZN19 808 aa12.63□□□□□ -0.39
PTPRU-204ENST00000428026 H1FOOQ8IZA3 346 aaPredicted RBP12.63□□□□□ -0.39
PTPRU-204ENST00000428026 GRAMD2BQ96HH9 432 aa12.63□□□□□ -0.39
PTPRU-204ENST00000428026 CXXC4Q9H2H0 198 aa12.63□□□□□ -0.39
PTPRU-204ENST00000428026 DTX4Q9Y2E6 619 aa12.63□□□□□ -0.39
PTPRU-204ENST00000428026 GREM1O60565 184 aa12.63□□□□□ -0.39
PTPRU-204ENST00000428026 BGLAPP02818 100 aa12.63□□□□□ -0.39
PTPRU-204ENST00000428026 RHBDD2Q6NTF9 364 aa12.63□□□□□ -0.39
PTPRU-204ENST00000428026 WDR31Q8NA23 367 aa12.63□□□□□ -0.39
PTPRU-204ENST00000428026 OTX1P32242 354 aaPredicted RBP12.62□□□□□ -0.39
PTPRU-204ENST00000428026 RPL30P62888 115 aaKnown RBP12.62□□□□□ -0.39
PTPRU-204ENST00000428026 TMEM211Q6ICI0 200 aa12.62□□□□□ -0.39
PTPRU-204ENST00000428026 UCN2Q96RP3 112 aa12.62□□□□□ -0.39
PTPRU-204ENST00000428026 H2BFSP57053 126 aa12.62□□□□□ -0.39
PTPRU-204ENST00000428026 ZNF488Q96MN9 340 aa12.62□□□□□ -0.39
PTPRU-204ENST00000428026 GAGE10A6NGK3 116 aa12.62□□□□□ -0.39
PTPRU-204ENST00000428026 RECKO95980 971 aa12.62□□□□□ -0.39
PTPRU-204ENST00000428026 LSM6P62312 80 aaKnown RBP12.62□□□□□ -0.39
PTPRU-204ENST00000428026 PGLYRP3Q96LB9 341 aa12.62□□□□□ -0.39
PTPRU-204ENST00000428026 PARD6GQ9BYG4 376 aaPredicted RBP12.62□□□□□ -0.39
PTPRU-204ENST00000428026 TUBGCP6Q96RT7 1819 aa12.62□□□□□ -0.39
PTPRU-204ENST00000428026 STAG3L2P0CL84 134 aa12.62□□□□□ -0.39
PTPRU-204ENST00000428026 ACP1P24666 158 aa12.62□□□□□ -0.39
PTPRU-204ENST00000428026 SPINK14Q6IE38 97 aa12.62□□□□□ -0.39
PTPRU-204ENST00000428026 ZNF788Q6ZQV5 615 aa12.62□□□□□ -0.39
PTPRU-204ENST00000428026 ARL6IP6Q8N6S5 226 aa12.62□□□□□ -0.39
PTPRU-204ENST00000428026 SPTBN2O15020 2390 aa12.62□□□□□ -0.39
PTPRU-204ENST00000428026 IGKV3-7A0A075B6H7 116 aa12.62□□□□□ -0.39
PTPRU-204ENST00000428026 PTP4A3O75365 173 aa12.62□□□□□ -0.39
PTPRU-204ENST00000428026 PAFAH1B2P68402 229 aa12.62□□□□□ -0.39
PTPRU-204ENST00000428026 A0A1W2PPE3 182 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 TMPRSS2O15393 492 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 KLF3P57682 345 aaPredicted RBP12.61□□□□□ -0.39
PTPRU-204ENST00000428026 TGIF1Q15583 401 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 CARFQ8N187 725 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 TMEM52Q8NDY8 209 aa12.61□□□□□ -0.39
PTPRU-204ENST00000428026 THYN1Q9P016 225 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms