RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 MAP1LC3AQ9H492 121 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 TRIM45Q9H8W5 580 aaPredicted RBP2.3□□□□□ -2.04
USP40-204ENST00000427947 BTRCQ9Y297 605 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 KLF13Q9Y2Y9 288 aaPredicted RBP2.3□□□□□ -2.04
USP40-204ENST00000427947 ZNF706Q9Y5V0 76 aaPredicted RBP2.3□□□□□ -2.04
USP40-204ENST00000427947 PLA2R1Q13018 1463 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 PLB1Q6P1J6 1458 aa2.3□□□□□ -2.04
USP40-204ENST00000427947 KIF26AQ9ULI4 1882 aaPredicted RBP2.3□□□□□ -2.04
USP40-204ENST00000427947 VIRMAQ69YN4 1812 aaKnown RBP2.29□□□□□ -2.04
USP40-204ENST00000427947 ARHGEF28Q8N1W1 1705 aaKnown RBP2.29□□□□□ -2.04
USP40-204ENST00000427947 EIF4G3O43432 1585 aaKnown RBP2.29□□□□□ -2.04
USP40-204ENST00000427947 ABCC8Q09428 1581 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 CPS1P31327 1500 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 NUP153P49790 1475 aaKnown RBP2.29□□□□□ -2.04
USP40-204ENST00000427947 ADAMTS13Q76LX8 1427 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 IGLV2-18A0A075B6J9 118 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 CCL15-CCL14A0A0B4J2E2 113 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 PGPA6NDG6 321 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 CENPBD1B2RD01 187 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 C21orf140B9A014 251 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 RGS5O15539 181 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 ZNF207O43670 478 aaKnown RBP2.29□□□□□ -2.04
USP40-204ENST00000427947 COX7A2P2O60397 106 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 GCM2O75603 506 aaPredicted RBP2.29□□□□□ -2.04
USP40-204ENST00000427947 SCO1O75880 301 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 RBBP9O75884 186 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 CYB5R3P00387 301 aaPredicted RBP2.29□□□□□ -2.04
USP40-204ENST00000427947 IGLV2-8P01709 118 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 IGHV3-11P01762 117 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 APCSP02743 223 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 SCGB1C2P0DMR2 95 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 S100A2P29034 98 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 HOXA6P31267 233 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 TCL1AP56279 114 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 ACTBP60709 375 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 ACTG1P63261 375 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 PPP1R1AQ13522 171 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 ZNF235Q14590 738 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 CCL15Q16663 113 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 CLEC12BQ2HXU8 276 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 ZNF404Q494X3 552 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 Q499Y3 187 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 ACSM3Q53FZ2 586 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 YIF1BQ5BJH7 314 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 TTMPQ5BVD1 217 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 SLC25A34Q6PIV7 304 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 LRRN1Q6UXK5 716 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 COMMD7Q86VX2 200 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 TRAPPC5Q8IUR0 188 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 OR2M7Q8NG81 312 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 OR1L1Q8NH94 360 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 SCGB1C1Q8TD33 95 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 CASTOR1Q8WTX7 329 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 RAB8BQ92930 207 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 PPCDCQ96CD2 204 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 L3HYPDHQ96EM0 354 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 PPP1R36Q96LQ0 422 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 MBOAT7Q96N66 472 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 TIPINQ9BVW5 301 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 ZNF436Q9C0F3 470 aaPredicted RBP2.29□□□□□ -2.04
USP40-204ENST00000427947 DERL2Q9GZP9 239 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 MS4A6AQ9H2W1 248 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 ASB7Q9H672 318 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 RBM12B-AS1Q9P1G2 102 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 TP53TG1Q9Y2A0 90 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 ALG5Q9Y673 324 aa2.29□□□□□ -2.04
USP40-204ENST00000427947 DNMBPQ6XZF7 1577 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 EVC2Q86UK5 1308 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 TRAV40A0A0B4J280 105 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 A0A0U1RQV1 116 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 FAM183AA6NL82 134 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 H0YJW9 148 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 CCNKO75909 580 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 ARL6IP5O75915 188 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 KCNK2O95069 426 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 YIF1AO95070 293 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 HLA-DQB1P01920 261 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 IFNA6P05013 189 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 ISG15P05161 165 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 SOD3P08294 240 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 CFL1P23528 166 aaKnown RBP2.28□□□□□ -2.04
USP40-204ENST00000427947 EVI2BP34910 448 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 IDH2P48735 452 aaKnown RBP2.28□□□□□ -2.04
USP40-204ENST00000427947 TGM4P49221 684 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 RAP1GDS1P52306 607 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 KRTAP10-10P60014 251 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 FAM3AP98173 230 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 CDC20Q12834 499 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 C1DQ13901 141 aaKnown RBP2.28□□□□□ -2.04
USP40-204ENST00000427947 ELOCQ15369 112 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 RASSF6Q6ZTQ3 369 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 FA2HQ7L5A8 372 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 SLC16A13Q7RTY0 426 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 NEGR1Q7Z3B1 354 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 CPNE9Q8IYJ1 553 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 LINC00337Q8N6G1 96 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 OR52E4Q8NGH9 312 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 OR5D18Q8NGL1 313 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 DERL3Q96Q80 235 aa2.28□□□□□ -2.04
USP40-204ENST00000427947 STACQ99469 402 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms