RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 H1FOOQ8IZA3 346 aaPredicted RBP12.14□□□□□ -0.47
LIG1-202ENST00000427526 HIST1H2AAQ96QV6 131 aa12.14□□□□□ -0.47
LIG1-202ENST00000427526 LIPGQ9Y5X9 500 aa12.14□□□□□ -0.47
LIG1-202ENST00000427526 LOC400499M0QZD8 3231 aa12.14□□□□□ -0.47
LIG1-202ENST00000427526 DNAJC13O75165 2243 aa12.14□□□□□ -0.47
LIG1-202ENST00000427526 HS3ST1O14792 307 aa12.14□□□□□ -0.47
LIG1-202ENST00000427526 DEFA6Q01524 100 aa12.14□□□□□ -0.47
LIG1-202ENST00000427526 FABP9Q0Z7S8 132 aa12.14□□□□□ -0.47
LIG1-202ENST00000427526 TCF15Q12870 199 aa12.14□□□□□ -0.47
LIG1-202ENST00000427526 IL24Q13007 206 aa12.14□□□□□ -0.47
LIG1-202ENST00000427526 OR8G1Q15617 311 aa12.14□□□□□ -0.47
LIG1-202ENST00000427526 HAGHQ16775 308 aa12.14□□□□□ -0.47
LIG1-202ENST00000427526 SSX9Q7RTT3 188 aa12.14□□□□□ -0.47
LIG1-202ENST00000427526 APH1AQ96BI3 265 aa12.14□□□□□ -0.47
LIG1-202ENST00000427526 ATP5SQ99766 215 aa12.14□□□□□ -0.47
LIG1-202ENST00000427526 DEFB127Q9H1M4 99 aa12.14□□□□□ -0.47
LIG1-202ENST00000427526 OPA3Q9H6K4 179 aa12.14□□□□□ -0.47
LIG1-202ENST00000427526 KLF13Q9Y2Y9 288 aaPredicted RBP12.14□□□□□ -0.47
LIG1-202ENST00000427526 WNT2P09544 360 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 SLC25A6P12236 298 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 C1QL4Q86Z23 238 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 GPR146Q96CH1 333 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 CABLES2Q9BTV7 478 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 A0A1B0GU03 582 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 C3orf80F5H4A9 247 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 H3BQ15 152 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 KLRC4-KLRK1H3BQV0 150 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 SLC33A1O00400 549 aaPredicted RBP12.13□□□□□ -0.47
LIG1-202ENST00000427526 WNT5AP41221 380 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 ARG2P78540 354 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 ICAM4Q14773 271 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 RNFT1Q5M7Z0 435 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 HEPN1Q6WQI6 88 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 ZNF573Q86YE8 665 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 OR10J5Q8NHC4 309 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 RDH5Q92781 318 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 UNKLQ9H9P5 680 aaKnown RBP12.13□□□□□ -0.47
LIG1-202ENST00000427526 ASCL3Q9NQ33 180 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 ERRFI1Q9UJM3 462 aaPredicted RBP12.13□□□□□ -0.47
LIG1-202ENST00000427526 CBY1Q9Y3M2 126 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 MPC1Q9Y5U8 109 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 SLC31A2O15432 143 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 OR2C1O95371 312 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 IGLV2-14P01704 120 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 WT1P19544 449 aaPredicted RBP12.13□□□□□ -0.47
LIG1-202ENST00000427526 TAS2R30P59541 319 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 HLA-DRB3P79483 266 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 SSX2Q16385 188 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 FAM58AQ8N1B3 248 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 DLL3Q9NYJ7 618 aa12.13□□□□□ -0.47
LIG1-202ENST00000427526 OR5B21A6NL26 309 aa12.12□□□□□ -0.47
LIG1-202ENST00000427526 TXNL1O43396 289 aa12.12□□□□□ -0.47
LIG1-202ENST00000427526 SCAF4O95104 1147 aaKnown RBP12.12□□□□□ -0.47
LIG1-202ENST00000427526 HSPB1P04792 205 aaKnown RBP12.12□□□□□ -0.47
LIG1-202ENST00000427526 OR8U8P0C7N1 319 aa12.12□□□□□ -0.47
LIG1-202ENST00000427526 CD46P15529 392 aa12.12□□□□□ -0.47
LIG1-202ENST00000427526 TAS2R60P59551 318 aa12.12□□□□□ -0.47
LIG1-202ENST00000427526 OR2B8PP59922 312 aa12.12□□□□□ -0.47
LIG1-202ENST00000427526 GNG3P63215 75 aa12.12□□□□□ -0.47
LIG1-202ENST00000427526 ZNF506Q5JVG8 444 aa12.12□□□□□ -0.47
LIG1-202ENST00000427526 DPPA3Q6W0C5 159 aa12.12□□□□□ -0.47
LIG1-202ENST00000427526 Q6ZRM9 215 aa12.12□□□□□ -0.47
LIG1-202ENST00000427526 NUFIP2Q7Z417 695 aaKnown RBP12.12□□□□□ -0.47
LIG1-202ENST00000427526 C17orf78Q8N4C9 275 aa12.12□□□□□ -0.47
LIG1-202ENST00000427526 MUCL1Q96DR8 90 aa12.12□□□□□ -0.47
LIG1-202ENST00000427526 ANKRD30BLA7E2S9 258 aa12.12□□□□□ -0.47
LIG1-202ENST00000427526 PSG2P11465 335 aa12.12□□□□□ -0.47
LIG1-202ENST00000427526 SPINK2P20155 84 aa12.12□□□□□ -0.47
LIG1-202ENST00000427526 PLP2Q04941 152 aa12.12□□□□□ -0.47
LIG1-202ENST00000427526 SLC10A1Q14973 349 aa12.12□□□□□ -0.47
LIG1-202ENST00000427526 CLDND2Q8NHS1 167 aa12.12□□□□□ -0.47
LIG1-202ENST00000427526 RAB39BQ96DA2 213 aa12.12□□□□□ -0.47
LIG1-202ENST00000427526 OR51I2Q9H344 312 aa12.12□□□□□ -0.47
LIG1-202ENST00000427526 NPIPB11E5RHQ5 1161 aa12.11□□□□□ -0.47
LIG1-202ENST00000427526 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.11□□□□□ -0.47
LIG1-202ENST00000427526 RHBDL1O75783 438 aa12.11□□□□□ -0.47
LIG1-202ENST00000427526 IGKV1-39P01597 117 aa12.11□□□□□ -0.47
LIG1-202ENST00000427526 IGKV1D-39P04432 117 aa12.11□□□□□ -0.47
LIG1-202ENST00000427526 CCL11P51671 97 aa12.11□□□□□ -0.47
LIG1-202ENST00000427526 TLE4Q04727 773 aa12.11□□□□□ -0.47
LIG1-202ENST00000427526 ZNF766Q5HY98 468 aa12.11□□□□□ -0.47
LIG1-202ENST00000427526 AKR1C8PQ5T2L2 129 aa12.11□□□□□ -0.47
LIG1-202ENST00000427526 CA5BP1Q8WTZ4 195 aa12.11□□□□□ -0.47
LIG1-202ENST00000427526 PKIBQ9C010 78 aa12.11□□□□□ -0.47
LIG1-202ENST00000427526 DMRT1Q9Y5R6 373 aa12.11□□□□□ -0.47
LIG1-202ENST00000427526 S100GP29377 79 aa12.11□□□□□ -0.47
LIG1-202ENST00000427526 Q6P435 159 aa12.11□□□□□ -0.47
LIG1-202ENST00000427526 OR51H1Q8NH63 302 aa12.11□□□□□ -0.47
LIG1-202ENST00000427526 RBMXL1Q96E39 390 aaKnown RBP12.11□□□□□ -0.47
LIG1-202ENST00000427526 A0A087WWC5 75 aa12.11□□□□□ -0.47
LIG1-202ENST00000427526 TRAV1-1A0A0B4J248 108 aa12.11□□□□□ -0.47
LIG1-202ENST00000427526 SERPINE2P07093 398 aa12.11□□□□□ -0.47
LIG1-202ENST00000427526 CD82P27701 267 aa12.11□□□□□ -0.47
LIG1-202ENST00000427526 PMP22Q01453 160 aa12.11□□□□□ -0.47
LIG1-202ENST00000427526 CYB561D1Q8N8Q1 229 aa12.11□□□□□ -0.47
LIG1-202ENST00000427526 PRSS33Q8NF86 280 aa12.11□□□□□ -0.47
LIG1-202ENST00000427526 RAB40CQ96S21 281 aa12.11□□□□□ -0.47
LIG1-202ENST00000427526 OR1A1Q9P1Q5 309 aa12.11□□□□□ -0.47
LIG1-202ENST00000427526 FAM186AA6NE01 2351 aa12.1□□□□□ -0.47
LIG1-202ENST00000427526 PIGBOS1A0A0B4J2F0 54 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms