RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 OR5P3Q8WZ94 311 aa9.08□□□□□ -0.96
CUX1-205ENST00000425244 SPIN2AQ99865 258 aa9.08□□□□□ -0.96
CUX1-205ENST00000425244 SPIN2BQ9BPZ2 258 aa9.08□□□□□ -0.96
CUX1-205ENST00000425244 SPACA1Q9HBV2 294 aa9.08□□□□□ -0.96
CUX1-205ENST00000425244 RPS10P5Q9NQ39 176 aa9.08□□□□□ -0.96
CUX1-205ENST00000425244 ZNF724A8MTY0 619 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 FAM157AC9JC47 383 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 SNRNP70P08621 437 aaKnown RBP9.07□□□□□ -0.96
CUX1-205ENST00000425244 RNPS1Q15287 305 aaKnown RBP9.07□□□□□ -0.96
CUX1-205ENST00000425244 CISD2Q8N5K1 135 aaKnown RBP9.07□□□□□ -0.96
CUX1-205ENST00000425244 CNEP1R1Q8N9A8 125 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 C14orf79Q96F83 325 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 ATP23Q9Y6H3 246 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 COL12A1Q99715 3063 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 PPP1CCP36873 323 aaKnown RBP9.07□□□□□ -0.96
CUX1-205ENST00000425244 DEFA6Q01524 100 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 SSX2Q16385 188 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 OR2B11Q5JQS5 317 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 SSX9Q7RTT3 188 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 MDP1Q86V88 176 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 FAM58AQ8N1B3 248 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 OR2G3Q8NGZ4 309 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 CD300LFQ8TDQ1 290 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 FAM122AQ96E09 287 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 TMEM56Q96MV1 263 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 CLCC1Q96S66 551 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 SSUH2Q9Y2M2 353 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 KPTNQ9Y664 436 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 TMEM56-RWDD3S4R434 201 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 PCNX1Q96RV3 2341 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 TRAV24A0A0B4J272 114 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 SLC31A2O15432 143 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 IL18BPO95998 194 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 DAOP14920 347 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 GNG3P63215 75 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 C9orf152Q5JTZ5 239 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 AVPI1Q5T686 147 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 ZNF573Q86YE8 665 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 OR5C1Q8NGR4 320 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 LYPD6BQ8NI32 183 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 RNASE11Q8TAA1 199 aaKnown RBP9.07□□□□□ -0.96
CUX1-205ENST00000425244 MRPL30Q8TCC3 161 aaKnown RBP9.07□□□□□ -0.96
CUX1-205ENST00000425244 PFDN5Q99471 154 aa9.07□□□□□ -0.96
CUX1-205ENST00000425244 H3BP45 60 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 IGHG3P01860 377 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 OR13C7P0DN81 318 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 TAS2R60P59551 318 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 IZUMO4Q1ZYL8 232 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 Q6ZS49 121 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 TMEM252Q8N6L7 170 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 OR10J5Q8NHC4 309 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 TMEM171Q8WVE6 324 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 SARAFQ96BY9 339 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 ABHD14AQ9BUJ0 271 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 SEBOXQ9HB31 216 aaPredicted RBP9.06□□□□□ -0.96
CUX1-205ENST00000425244 SMCO4Q9NRQ5 59 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 SH3BGRL2Q9UJC5 107 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 ERRFI1Q9UJM3 462 aaPredicted RBP9.06□□□□□ -0.96
CUX1-205ENST00000425244 ACACBO00763 2458 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 COL6A6A6NMZ7 2263 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 MEX3AA1L020 520 aaKnown RBP9.06□□□□□ -0.96
CUX1-205ENST00000425244 SIRPB1O00241 398 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 DEGS1O15121 323 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 PGLYRP1O75594 196 aaPredicted RBP9.06□□□□□ -0.96
CUX1-205ENST00000425244 TUSC2O75896 110 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 NDUFB7P17568 137 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 ATP6V0CP27449 155 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 CEBPGP53567 150 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 AWAT1Q58HT5 328 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 FAM180AQ6UWF9 173 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 PLEKHF2Q9H8W4 249 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 GLRX2Q9NS18 164 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 OR1A1Q9P1Q5 309 aa9.06□□□□□ -0.96
CUX1-205ENST00000425244 STRAPQ9Y3F4 350 aaKnown RBP9.06□□□□□ -0.96
CUX1-205ENST00000425244 ESPL1Q14674 2120 aa9.05□□□□□ -0.96
CUX1-205ENST00000425244 INTS1Q8N201 2190 aaKnown RBP9.05□□□□□ -0.96
CUX1-205ENST00000425244 A6NJY4 79 aa9.05□□□□□ -0.96
CUX1-205ENST00000425244 UMAD1C9J7I0 102 aa9.05□□□□□ -0.96
CUX1-205ENST00000425244 CHST1O43916 411 aa9.05□□□□□ -0.96
CUX1-205ENST00000425244 SS18L1O75177 396 aaPredicted RBP9.05□□□□□ -0.96
CUX1-205ENST00000425244 TMEM50AO95807 157 aa9.05□□□□□ -0.96
CUX1-205ENST00000425244 SERPINE2P07093 398 aa9.05□□□□□ -0.96
CUX1-205ENST00000425244 CELA3BP08861 270 aa9.05□□□□□ -0.96
CUX1-205ENST00000425244 CTXN2P0C2S0 81 aa9.05□□□□□ -0.96
CUX1-205ENST00000425244 VDAC1P21796 283 aa9.05□□□□□ -0.96
CUX1-205ENST00000425244 RAB5CP51148 216 aa9.05□□□□□ -0.96
CUX1-205ENST00000425244 DYNLT3P51808 116 aa9.05□□□□□ -0.96
CUX1-205ENST00000425244 RND3P61587 244 aa9.05□□□□□ -0.96
CUX1-205ENST00000425244 ZNF266Q14584 549 aa9.05□□□□□ -0.96
CUX1-205ENST00000425244 PRR30Q53SZ7 412 aaPredicted RBP9.05□□□□□ -0.96
CUX1-205ENST00000425244 OR1K1Q8NGR3 316 aa9.05□□□□□ -0.96
CUX1-205ENST00000425244 ISOC2Q96AB3 205 aa9.05□□□□□ -0.96
CUX1-205ENST00000425244 POM121Q96HA1 1249 aa9.05□□□□□ -0.96
CUX1-205ENST00000425244 SLC25A31Q9H0C2 315 aa9.05□□□□□ -0.96
CUX1-205ENST00000425244 PLK3Q9H4B4 646 aa9.05□□□□□ -0.96
CUX1-205ENST00000425244 LYRM2Q9NU23 88 aaPredicted RBP9.05□□□□□ -0.96
CUX1-205ENST00000425244 RBM7Q9Y580 266 aaKnown RBP9.05□□□□□ -0.96
CUX1-205ENST00000425244 DMRT1Q9Y5R6 373 aa9.05□□□□□ -0.96
CUX1-205ENST00000425244 KIAA2026Q5HYC2 2103 aa9.05□□□□□ -0.96
CUX1-205ENST00000425244 OR5B21A6NL26 309 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms