RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 MRPS21P82921 87 aaKnown RBP9.13□□□□□ -0.95
USP54-204ENST00000422491 TESK1Q15569 626 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 TDRG1Q3Y452 100 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 RHBDD2Q6NTF9 364 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 TEX43Q6ZNM6 134 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 TMEM144Q7Z5S9 345 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.13□□□□□ -0.95
USP54-204ENST00000422491 ANKRD37Q7Z713 158 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 LMX1AQ8TE12 382 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 GATAD1Q8WUU5 269 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 TAF15Q92804 592 aaKnown RBP eCLIP9.13□□□□□ -0.95
USP54-204ENST00000422491 PLA2G3Q9NZ20 509 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 PXMP4Q9Y6I8 212 aa9.13□□□□□ -0.95
USP54-204ENST00000422491 hCG_38984A0A1B0GV85 526 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 VENTXO95231 258 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 IL6RP08887 468 aaPredicted RBP9.12□□□□□ -0.95
USP54-204ENST00000422491 KCNIP4Q6PIL6 250 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 ZNF611Q8N823 705 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 Q8NFD4 153 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 WNT16Q9UBV4 365 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 CACNG5Q9UF02 275 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 HMGB3O15347 200 aaKnown RBP9.12□□□□□ -0.95
USP54-204ENST00000422491 IGKV1-39P01597 117 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 IGKV1D-39P04432 117 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 PSG2P11465 335 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 ARL4DP49703 201 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 TNFSF10P50591 281 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 UBE2NP61088 152 aaKnown RBP9.12□□□□□ -0.95
USP54-204ENST00000422491 TPTE2P1Q5T6R2 138 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 DMRTA1Q5VZB9 504 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 ARL6IP6Q8N6S5 226 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 OR4F5Q8NH21 305 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 WDYHV1Q96HA8 205 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 OR4F4Q96R69 305 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 TMEM106BQ9NUM4 274 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 TRAPPC1Q9Y5R8 145 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 IGHV3-15A0A0B4J1V0 119 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 FAM90A10PA6NDY2 464 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 FAM90A18PA6NE21 464 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 FAM90A16PA6NEW6 464 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 FAM90A20PA6NIJ5 464 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 FAM90A8PA6NJQ4 464 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 FAM90A7PA6NKC0 464 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 FAM90A22PA8MWA6 464 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 FAM90A12PA8MX19 464 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 FAM90A5PA8MXJ8 464 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 FAM90A23PA8MXZ1 464 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 MLNRO43193 412 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 FAM90A15PP0C7V4 464 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 FAM90A13PP0C7W8 464 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 FAM90A14PP0C7W9 464 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 FAM90A24PP0C7X0 464 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 CFHR1Q03591 330 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 KRTAP27-1Q3LI81 207 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 FAM78BQ5VT40 261 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 FAM69BQ5VUD6 431 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 PLCXD3Q63HM9 321 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 ACSM6Q6P461 480 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 PCSK4Q6UW60 755 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 LRP11Q86VZ4 500 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 FADS6Q8N9I5 356 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 OR1F12Q8NHA8 337 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 BADQ92934 168 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 ULBP2Q9BZM5 246 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 IGFLR1Q9H665 355 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 SLC25A22Q9H936 323 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 TIMM9Q9Y5J7 89 aa9.12□□□□□ -0.95
USP54-204ENST00000422491 UBE2L5PA0A1B0GUS4 154 aa9.11□□□□□ -0.95
USP54-204ENST00000422491 A0A1W2PPC4 97 aa9.11□□□□□ -0.95
USP54-204ENST00000422491 SERPINE2P07093 398 aa9.11□□□□□ -0.95
USP54-204ENST00000422491 CD33P20138 364 aa9.11□□□□□ -0.95
USP54-204ENST00000422491 NPPCP23582 126 aa9.11□□□□□ -0.95
USP54-204ENST00000422491 CHRNA7P36544 502 aa9.11□□□□□ -0.95
USP54-204ENST00000422491 Q6ZWC4 215 aa9.11□□□□□ -0.95
USP54-204ENST00000422491 OR51H1Q8NH63 302 aa9.11□□□□□ -0.95
USP54-204ENST00000422491 LSM10Q969L4 123 aaKnown RBP9.11□□□□□ -0.95
USP54-204ENST00000422491 UCN2Q96RP3 112 aa9.11□□□□□ -0.95
USP54-204ENST00000422491 OR2J1Q9GZK6 312 aa9.11□□□□□ -0.95
USP54-204ENST00000422491 PARD6AQ9NPB6 346 aa9.11□□□□□ -0.95
USP54-204ENST00000422491 MANBALQ9NQG1 85 aa9.11□□□□□ -0.95
USP54-204ENST00000422491 ATP23Q9Y6H3 246 aa9.11□□□□□ -0.95
USP54-204ENST00000422491 SPTBN5Q9NRC6 3674 aaKnown RBP9.11□□□□□ -0.95
USP54-204ENST00000422491 KIR2DS1A0A191URI9 304 aa9.11□□□□□ -0.95
USP54-204ENST00000422491 CTXND1A0A1B0GTU2 59 aa9.11□□□□□ -0.95
USP54-204ENST00000422491 OR6C6A6NF89 314 aa9.11□□□□□ -0.95
USP54-204ENST00000422491 UMODP07911 640 aa9.11□□□□□ -0.95
USP54-204ENST00000422491 CTXN2P0C2S0 81 aa9.11□□□□□ -0.95
USP54-204ENST00000422491 FKBP2P26885 142 aaKnown RBP9.11□□□□□ -0.95
USP54-204ENST00000422491 KIR2DS4P43632 304 aa9.11□□□□□ -0.95
USP54-204ENST00000422491 KIR2DS1Q14954 304 aa9.11□□□□□ -0.95
USP54-204ENST00000422491 CST9LP1Q5W188 147 aa9.11□□□□□ -0.95
USP54-204ENST00000422491 TOMM20LQ6UXN7 152 aa9.11□□□□□ -0.95
USP54-204ENST00000422491 ZIC4Q8N9L1 334 aa9.11□□□□□ -0.95
USP54-204ENST00000422491 OR10V1Q8NGI7 309 aa9.11□□□□□ -0.95
USP54-204ENST00000422491 PIGCQ92535 297 aa9.11□□□□□ -0.95
USP54-204ENST00000422491 PIGBOS1A0A0B4J2F0 54 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 A0A0U1RQK1 487 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 ZNF320A2RRD8 509 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 NPIPA2E9PIF3 369 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 NPIPA3F8WFD2 350 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms